Genes Covered By A Chromosome Alteration FN0171208.01.07.M4.10

Gene Name

Gene Annotation

Glyma20g20280

N-acetylglucosaminyltransferase II (MGAT2) PFAM PF05060
BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II Panther PTHR12871
N-acetylglucosaminyltransferase KOG KOG2791
Golgi stack PFAM PF05060
Golgi stack Panther PTHR12871
N-acetylglucosaminyltransferase KOG KOG2791
beta-1,2-N-acetylglucosaminyltransferase II AT AT2G05320

protein binding PFAM PF00560
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine-rich repeat protein KOG KOG0472
disease resistance family protein / LRR family protein AT AT2G34930

Glyma20g20543

WD domain, G-beta repeat PFAM PF00400
WD40 REPEAT PROTEIN Panther PTHR22847
WD40 repeat protein KOG KOG2444
transducin family protein / WD-40 repeat family protein AT AT2G34260

Glyma20g20630

AT AT4G13540

Glyma20g20692

nucleic acid binding PFAM PF00075
RETROELEMENT POL POLYPROTEIN-RELATED Panther PTHR10178:SF22
Polynucleotidyl transferase, ribonuclease H-like superfamily protein AT AT3G01410

Glyma20g20754

PIF1 helicase PFAM PF05970
viral genome replication PFAM PF02689
HELICASE-RELATED Panther PTHR10492
DNA helicase PIF1/RRM3 KOG KOG0987
PIF1 helicase AT AT3G51690

Glyma20g20817

Domain of unknown function DUF223 PFAM PF02721
Nucleic acid-binding, OB-fold-like protein AT AT2G05642

Glyma20g20880

Late embryogenesis abundant protein PFAM PF02987
Late embryogenesis abundant protein (LEA) family protein AT AT4G13560

Glyma20g20890

Lipase (class 3) PFAM PF01764
MCTP-RELATED Panther PTHR16122
Predicted lipase KOG KOG4569
protein binding PFAM PF00168
triglyceride lipase activity PFAM PF01764
MCTP-RELATED Panther PTHR16122
Predicted lipase KOG KOG4569
triglyceride lipases;triglyceride lipases AT AT4G13550

Glyma20g20900

small acidic protein 1 AT AT4G13520

Glyma20g20910

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR-like) superfamily protein AT AT2G32630

Glyma20g20920

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PFAM PF00076
RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED Panther PTHR10693
RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains KOG KOG0116
intracellular PFAM PF02136
nucleic acid binding PFAM PF00076
RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED Panther PTHR10693
RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains KOG KOG0116
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT AT5G43960

Glyma20g20930

C2 domain PFAM PF00168
gb def: Emb|CAB80929.1 Panther PTHR22949:SF1
protein binding PFAM PF00168
gb def: Emb|CAB80929.1 Panther PTHR22949:SF1
Calcium-dependent lipid-binding (CaLB domain) family protein AT AT2G33320

Glyma20g20950

AT AT1G04555

Glyma20g20980

Myb-like DNA-binding domain PFAM PF00249
MYB-RELATED Panther PTHR10641
Transcription factor, Myb superfamily KOG KOG0048
myb proto-oncogene protein, plant KO K09422
Myb-like DNA-binding domain PFAM PF00249
MYB-RELATED Panther PTHR10641
Transcription factor, Myb superfamily KOG KOG0048
myb proto-oncogene protein, plant KO K09422
myb domain protein 79 AT AT4G13480

Glyma20g20996

HELICASE-RELATED Panther PTHR10492

Glyma20g21013

PIF1 helicase PFAM PF05970
viral genome replication PFAM PF02689
HELICASE-RELATED Panther PTHR10492
PIF1 helicase AT AT5G28780

Glyma20g21030

Ammonium Transporter Family PFAM PF00909
AMMONIUM TRANSPORTER Panther PTHR11730
Ammonia permease KOG KOG0682
TC.AMT; ammonium transporter, Amt family [COG:COG0004 ] [TC:2.A.49 ] KO K03320
response to karrikin GO GO:0080167
response to abscisic acid stimulus GO GO:0009737
lateral root formation GO GO:0010311
protein polymerization GO GO:0051258
nucleus GO GO:0005634
ammonium transmembrane transporter activity GO GO:0008519
membrane GO GO:0016020
plasma membrane GO GO:0005886
ammonium transport GO GO:0015696
ammonium transmembrane transport GO GO:0072488
transport GO GO:0006810
Ammonium Transporter Family PFAM PF00909
ammonium transmembrane transporter activity Panther PTHR11730
Ammonia permease KOG KOG0682
ammonium transporter 1;1 AT AT4G13510

Glyma20g21047

nodulin MtN21 /EamA-like transporter family protein AT AT3G28050

Glyma20g21064

integral to membrane PFAM PF03083
integral to membrane Panther PTHR10791
Nodulin MtN3 family protein AT AT4G15920

Glyma20g21082

nucleus PFAM PF01486
MADS BOX PROTEIN Panther PTHR11945
AGAMOUS-like 6 AT AT2G45650

Glyma20g21100

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PFAM PF00076
RNA-BINDING PROTEIN Panther PTHR10432
Splicing factor 3b, subunit 4 KOG KOG0131
nucleic acid binding PFAM PF00076
RNA-BINDING PROTEIN Panther PTHR10432
Splicing factor 3b, subunit 4 KOG KOG0131
RNA-binding (RRM/RBD/RNP motifs) family protein AT AT1G60000
gb def: similar to polyadenylate-binding protein 2 (poly(a) binding protein 2) (pabp 2) Panther PTHR10432:SF56

Glyma20g21115

hydrolase activity, acting on ester bonds PFAM PF04827
AT AT2G13770

Glyma20g21130

Domain of unknown function DUF26 PFAM PF01657
Domain of unknown function DUF26 PFAM PF01657
plasmodesmata-located protein 2 AT AT1G04520

Glyma20g21151

AMINO ACID TRANSPORTER Panther PTHR22950
Transmembrane amino acid transporter family protein AT AT3G56200

Glyma20g21171

protein dimerization activity PFAM PF05699
TRANSPOSASE-LIKE PROTEIN Panther PTHR11697:SF9
TTF-type zinc finger protein with HAT dimerisation domain AT AT1G19260

Glyma20g21190

Ribosomal protein S3, C-terminal domain PFAM PF00189
30S RIBOSOMAL PROTEIN S3 Panther PTHR11760
40S ribosomal protein S3 KOG KOG3181
RP-S3e, RPS3; small subunit ribosomal protein S3e [GO:0005843 ] KO K02985
NF-kappaB binding GO GO:0051059
iron-sulfur cluster binding GO GO:0051536
intracellular GO GO:0005622
negative regulation of DNA repair GO GO:0045738
negative regulation of NF-kappaB transcription factor activity GO GO:0032088
cellular protein metabolic process GO GO:0044267
ruffle membrane GO GO:0032587
viral transcription GO GO:0019083
protein kinase binding GO GO:0019901
endocrine pancreas development GO GO:0031018
response to DNA damage stimulus GO GO:0006974
viral infectious cycle GO GO:0019058
viral reproduction GO GO:0016032
gene expression GO GO:0010467
translational termination GO GO:0006415
induction of apoptosis GO GO:0006917
activation of caspase activity GO GO:0006919
translational elongation GO GO:0006414
translational initiation GO GO:0006413
nucleus GO GO:0005634
cytoplasm GO GO:0005737
cytosol GO GO:0005829
endonuclease activity GO GO:0004519
protein binding GO GO:0005515
ribonucleoprotein complex GO GO:0030529
damaged DNA binding GO GO:0003684
mRNA binding GO GO:0003729
DNA-(apurinic or apyrimidinic site) lyase activity GO GO:0003906
vacuolar membrane GO GO:0005774
RNA binding GO GO:0003723
response to abiotic stimulus GO GO:0009628
chloroplast GO GO:0009507
vacuole GO GO:0005773
nucleolus GO GO:0005730
cytosolic ribosome GO GO:0022626
response to salt stress GO GO:0009651
membrane GO GO:0016020
cytosolic small ribosomal subunit GO GO:0022627
structural constituent of ribosome GO GO:0003735
translation GO GO:0006412
RNA binding PFAM PF07650
intracellular PFAM PF00189
30S RIBOSOMAL PROTEIN S3 Panther PTHR11760
40S ribosomal protein S3 KOG KOG3181
small subunit ribosomal protein S3e KO K02985
Ribosomal protein S3 family protein AT AT5G35530

Glyma20g21200

Syntaxin 6, N-terminal PFAM PF09177
Golgi vesicle transport PFAM PF09177
Syntaxin/t-SNARE family protein AT AT4G30240
Syntaxin/t-SNARE family protein AT AT2G18860

Glyma20g21211

Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) KOG KOG2398
AT AT5G57460

Glyma20g21220

AT AT4G30230

Glyma20g21230

Core histone H2A/H2B/H3/H4 PFAM PF00125
HISTONE H4 Panther PTHR10484
Histone H4 KOG KOG3467
DNA binding PFAM PF00125
transcription initiation factor activity PFAM PF02969
nucleosome Panther PTHR10484
Histone H4 KOG KOG3467
histone H4 AT AT2G28740

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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