Genes Covered By A Chromosome Alteration FN0170255.09.M3.3

Gene Name

Gene Annotation

Glyma04g20610

Histone-like transcription factor (CBF/NF-Y) and archaeal histone PFAM PF00808
HISTONE H2A Panther PTHR23430
Histone 2A KOG KOG1757
nucleolus GO GO:0005730
nucleus GO GO:0005634
flower development GO GO:0009908
nucleosome GO GO:0000786
detection of temperature stimulus GO GO:0016048
defense response to bacterium GO GO:0042742
vacuole GO GO:0005773
regulation of flower development GO GO:0009909
DNA binding GO GO:0003677
protein binding GO GO:0005515
DNA binding PFAM PF00125
HISTONE H2A Panther PTHR23430
Histone 2A KOG KOG1757
histone H2A KO K11251
histone H2A protein 9 AT AT1G52740

Glyma04g20620

Chalcone and stilbene synthases, C-terminal domain PFAM PF02797
Activity=fatty acid elongase; Pathway=sciadonic acid biosynthesis SoyCyc PWY-6598
response to light stimulus GO GO:0009416
response to cold GO GO:0009409
transferase activity, transferring acyl groups other than amino-acyl groups GO GO:0016747
catalytic activity GO GO:0003824
membrane GO GO:0016020
Activity=fatty acid elongase; Pathway=wax esters biosynthesis I SoyCyc PWY-5884
fatty acid biosynthetic process PFAM PF08392
acyltransferase activity PFAM PF00195
lipid biosynthetic process PFAM PF08541
Chalcone and stilbene synthases, C-terminal domain PFAM PF02797
3-ketoacyl-CoA synthase 11 AT AT2G26640

Glyma04g20640

ATP SYNTHASE Panther PTHR15184
ATP binding PFAM PF00006
ATP SYNTHASE Panther PTHR15184
ATP synthase subunit beta AT ATCG00480

Glyma04g20710

SOUL heme-binding protein PFAM PF04832
HEME-BINDING PROTEIN-RELATED Panther PTHR11220
SOUL heme-binding family protein AT AT5G20140

Glyma04g20780

WD domain, G-beta repeat PFAM PF00400
WD40 REPEAT PROTEIN Panther PTHR22848
transducin family protein / WD-40 repeat family protein AT AT1G73720

Glyma04g20850

Methyltransferase domain PFAM PF08241
PROTEIN ARGININE N-METHYLTRANSFERASE Panther PTHR11006
Protein arginine N-methyltransferase PRMT1 and related enzymes KOG KOG1499
protein methyltransferase activity PFAM PF06325
methyltransferase activity PFAM PF05175
methyltransferase activity PFAM PF05185
Methyltransferase domain PFAM PF08241
PROTEIN ARGININE N-METHYLTRANSFERASE Panther PTHR11006
Protein arginine N-methyltransferase PRMT1 and related enzymes KOG KOG1499
protein arginine methyltransferase 10 AT AT1G04870

Glyma04g20855

ARM repeat superfamily protein AT AT1G27210

Glyma04g20860

PHOSPHOHEXOMUTASE FAMILY MEMBER Panther PTHR22573
intramolecular transferase activity, phosphotransferases PFAM PF02880
PHOSPHOHEXOMUTASE FAMILY MEMBER Panther PTHR22573
Phosphoglucomutase/phosphomannomutase family protein AT AT1G70730

Glyma04g20870

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein tyrosine kinase PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein kinase superfamily protein AT AT5G20050

Glyma04g21090

Phospholipase/Carboxylesterase PFAM PF02230
LYSOPHOSPHOLIPASE-RELATED Panther PTHR10655
Lysophospholipase KOG KOG2112
hydrolase activity PFAM PF02230
Serine hydrolase (FSH1) PFAM PF03959
PFAM PF03583
LYSOPHOSPHOLIPASE-RELATED Panther PTHR10655
Lysophospholipase KOG KOG2112
alpha/beta-Hydrolases superfamily protein AT AT5G20060

Glyma04g21170

nucleic acid binding PFAM PF00098

Glyma04g21250

Protein tyrosine kinase PFAM PF07714
protein phosphorylation PFAM PF00069
CDC2-RELATED KINASE Panther PTHR11295
Cyclin-dependent kinase CDK5 KOG KOG0662
Protein kinase superfamily protein AT AT2G40120

Glyma04g21330

F-box domain PFAM PF00646
protein binding PFAM PF00646
AT AT5G19970

Glyma04g21340

GRAS family transcription factor PFAM PF03514
Transcriptional regulator DELLA protein N terminal PFAM PF12041
GRAS family transcription factor PFAM PF03514
GRAS family transcription factor family protein AT AT1G14920

Glyma04g21376

ATPase activity PFAM PF00005
ATP-BINDING CASSETTE TRANSPORTER Panther PTHR19242
multidrug resistance-associated protein 6 AT AT3G21250

Glyma04g21413

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT Panther PTHR19376:SF1
DNA-directed RNA polymerase EC 2.7.7.6
DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] KO K03046
DNA-directed RNA polymerase family protein AT ATCG00170

Glyma04g21450

PAZ domain PFAM PF02170
EUKARYOTIC TRANSLATION INITIATION FACTOR 2C Panther PTHR22891
Domain of unknown function (DUF1785) PFAM PF08699
protein binding PFAM PF02170
protein binding PFAM PF02171
EUKARYOTIC TRANSLATION INITIATION FACTOR 2C Panther PTHR22891
Stabilizer of iron transporter SufD / Polynucleotidyl transferase AT AT5G43810
Translation initiation factor 2C (eIF-2C) and related proteins KOG KOG1041

Glyma04g21470

basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT AT5G54680

Glyma04g21680

Myb-like DNA-binding domain PFAM PF00249
Myb-like DNA-binding domain PFAM PF00249
Homeodomain-like superfamily protein AT AT2G03500

Glyma04g21753

protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine-rich repeat protein kinase family protein AT AT2G26730

Glyma04g21826

FAMILY NOT NAMED Panther PTHR13681
Domain of unknown function (DUF1767) AT AT5G19950

Glyma04g21900

Snf7 PFAM PF03357
SNF7-RELATED Panther PTHR10476
Vacuolar sorting protein VPS24 KOG KOG3229
ESCRT III complex GO GO:0000815
vesicle-mediated transport GO GO:0016192
protein transport PFAM PF03357
SNF7-RELATED Panther PTHR10476
Vacuolar sorting protein VPS24 KOG KOG3229
SNF7 family protein AT AT5G22950

Glyma04g21910

Acyl-ACP thioesterase PFAM PF01643
Thiolester hydrolases. EC 3.1.2.-
fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.-] KO K10781
Oleoyl-[acyl-carrier protein] hydrolase. EC 3.1.2.14
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=acyl-ACP thioesterase pathway SoyCyc PWY-5142
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=superpathway of fatty acid biosynthesis II (plant) SoyCyc PWY-5156
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=oleate biosynthesis I (plants) SoyCyc PWY-5147
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=palmitate biosynthesis II (bacteria and plants) SoyCyc PWY-5971
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=palmitoleate biosynthesis II SoyCyc PWY-5366
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=stearate biosynthesis II (plants) SoyCyc PWY-5989
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=oleate biosynthesis I plants SoyCyc PWY-5147
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=superpathway of fatty acid biosynthesis II plant SoyCyc PWY-5156
thiolester hydrolase activity PFAM PF12590
fatty acid biosynthetic process PFAM PF01643
Thiolester hydrolases. EC 3.1.2.-
oleoyl-[acyl-carrier-protein] hydrolase EC 3.1.2.14
fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.-] KO K10781
fatty acyl-ACP thioesterases B AT AT1G08510

Glyma04g22020

thylakoid PFAM PF00223
photosystem I P700 chlorophyll a apoprotein A1 KO K02689
Photosystem I, PsaA/PsaB protein AT ATCG00350

Glyma04g22130

Transferase family PFAM PF02458
transferase activity, transferring acyl groups other than amino-acyl groups PFAM PF02458
HXXXD-type acyl-transferase family protein AT AT1G03390

Glyma04g22140

bZIP transcription factor family protein AT AT1G77920

Glyma04g22152

plant U-box 13 AT AT3G46510

Glyma04g22164

nucleus PFAM PF01486
MADS BOX PROTEIN Panther PTHR11945
AGAMOUS-like 6 AT AT2G45650

Glyma04g22177

GLUTATHIONE-S-TRANSFERASE Panther PTHR11260:SF11
glutathione S-transferase TAU 8 AT AT3G09270

Glyma04g22190

X8 domain PFAM PF07983
hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00332
X8 domain PFAM PF07983
O-Glycosyl hydrolases family 17 protein AT AT3G24330

Glyma04g22262

Protein of unknown function (DUF1630) PFAM PF07792
UNCHARACTERIZED Panther PTHR13677
Uncharacterized conserved protein KOG KOG2432
AT AT1G73930

Glyma04g22334

ATP-BINDING CASSETTE TRANSPORTERS 6,8,9 Panther PTHR19229:SF7
ABC2 homolog 7 AT AT3G47790

Glyma04g22407

TCP family transcription factor PFAM PF03634
TCP family transcription factor AT AT3G18550

Glyma04g22480

Glyma04g22520

Arabidopsis proteins of unknown function PFAM PF03005
TRICHOME BIREFRINGENCE-LIKE 27 AT AT1G70230

Glyma04g22655

Glyma04g22790

Glyma04g22801

AT AT3G25590

Glyma04g22810

Protein of unknown function (DUF1262) PFAM PF06880
Protein of unknown function (DUF1262) PFAM PF06880
Protein of unknown function (DUF1262) AT AT1G13520

Glyma04g22815

Glyma04g22820

Glyma04g23050

IMPORTIN (RAN-BINDING PROTEIN) Panther PTHR10997
IMPORTIN (RAN-BINDING PROTEIN) Panther PTHR10997
ARM repeat superfamily protein AT AT1G26170

Glyma04g23080

IMPORTIN-ALPHA RE-EXPORTER RELATED Panther PTHR10997:SF9
IMPORTIN-ALPHA RE-EXPORTER RELATED Panther PTHR10997:SF9
ARM repeat superfamily protein AT AT1G26170

Glyma04g23095

ARM repeat superfamily protein AT AT1G26170

Glyma04g23110

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). Panther PTHR22764
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). Panther PTHR22764
RING/U-box superfamily protein AT AT1G23980

Glyma04g23120

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER CONTAINING PROTEIN Panther PTHR22937
AtL5 AT AT3G62690

Glyma04g23256

Glyma04g23393

PIF1 helicase PFAM PF05970
viral genome replication PFAM PF02689
HELICASE-RELATED Panther PTHR10492
PIF1 helicase AT AT3G51700

Glyma04g23530

Cellulose synthase PFAM PF03552
SUBFAMILY NOT NAMED Panther PTHR13301:SF1
Activity=1,4-beta-D-xylan synthase, cellulose synthase; Pathway=cellulose biosynthesis SoyCyc PWY-1001
Activity=1,4-beta-D-xylan synthase, cellulose synthase; Pathway=xylan biosynthesis SoyCyc PWY-5800
cell wall thickening GO GO:0052386
plant-type cell wall biogenesis GO GO:0009832
chloroplast GO GO:0009507
cellulose biosynthetic process GO GO:0030244
rhamnogalacturonan I side chain metabolic process GO GO:0010400
secondary cell wall biogenesis GO GO:0009834
plasma membrane GO GO:0005886
cellulose synthase activity GO GO:0016759
Activity=1,4-beta-D-xylan synthase; Pathway=xylan biosynthesis SoyCyc PWY-5800
Activity=1,4-beta-D-xylan synthase; Pathway=cellulose biosynthesis SoyCyc PWY-1001
cellulose synthase (UDP-forming) activity PFAM PF03552
SUBFAMILY NOT NAMED Panther PTHR13301:SF1
cellulose synthase (UDP-forming) EC 2.4.1.12
cellulose synthase A [EC:2.4.1.12] KO K10999
Cellulose synthase family protein AT AT5G17420

Glyma04g23536

Glyma04g23543

Glyma04g23550

Translation initiation factor IF-3, C-terminal domain PFAM PF00707
TRANSLATION INITIATION FACTOR IF-3 Panther PTHR10938
IF-3, infC; translation initiation factor IF-3 [COG:COG0290 ] [GO:0003743 ] KO K02520
translation initiation factor activity PFAM PF05198
translation initiation factor activity PFAM PF00707
translation initiation factor activity Panther PTHR10938
translation initiation factor IF-3 KO K02520
Translation initiation factor 3 protein AT AT2G24060

Glyma04g23560

MA3 domain PFAM PF02847
EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA Panther PTHR23253
Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) KOG KOG0401
RNA metabolic process PFAM PF02854
MA3 domain PFAM PF02847
EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA Panther PTHR23253
Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) KOG KOG0401
translation initiation factor eIF-4F KO K03260
MIF4G domain-containing protein / MA3 domain-containing protein AT AT5G57870

Glyma04g23760

IQ calmodulin-binding motif PFAM PF00612
MYOSIN-VII Panther PTHR13140:SF37
protein binding PFAM PF00612
MYOSIN-VII Panther PTHR13140:SF37
IQ-domain 11 AT AT5G13460

Glyma04g23780

Methyl-CpG binding domain PFAM PF01429
nucleus PFAM PF01429
methyl-CPG-binding domain 10 AT AT1G15340

Glyma04g23980

Methyl-CpG binding domain PFAM PF01429
nucleus PFAM PF01429
methyl-CPG-binding domain 10 AT AT1G15340

Glyma04g23990

AT AT5G53650

Glyma04g23996

hydrolase activity PFAM PF00383
CYTIDINE DEAMINASE Panther PTHR11644
cytidine deaminase 1 AT AT2G19570

Glyma04g24003

double-stranded RNA binding PFAM PF00035
dsRNA-binding protein 2 AT AT2G28380

Glyma04g24010

AP2 domain PFAM PF00847
sequence-specific DNA binding transcription factor activity PFAM PF00847
Integrase-type DNA-binding superfamily protein AT AT1G79700

Glyma04g24040

Family of unknown function (DUF566) PFAM PF04484
Family of unknown function (DUF566) PFAM PF04484
Family of unknown function (DUF566) AT AT4G30710

Glyma04g24047

Glyma04g24054

Pyridine nucleotide-disulphide oxidoreductase PFAM PF07992
flavin adenine dinucleotide binding PFAM PF00070
HI0933-like protein PFAM PF03486
monooxygenase activity PFAM PF01494
DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
FAD/NAD(P)-binding oxidoreductase family protein AT AT4G30720

Glyma04g24062

Glyma04g24070

Ubiquitin family PFAM PF00240
UV EXCISION REPAIR PROTEIN RAD23 Panther PTHR10621
RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B KOG KOG4495
Ubiquitin-2 like Rad60 SUMO-like PFAM PF11976
protein binding PFAM PF00240
UV EXCISION REPAIR PROTEIN RAD23 Panther PTHR10621
RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B KOG KOG4495
Ubiquitin-like superfamily protein AT AT5G57860

Glyma04g24270

Protein of unknown function, DUF593 PFAM PF04576
Protein of unknown function, DUF593 PFAM PF04576
Protein of unknown function, DUF593 AT AT4G30830

Glyma04g24285

Domain of unknown function (DUF3490) PFAM PF11995
KINESIN 31E - RELATED Panther PTHR16012:SF56
ATP binding microtubule motor family protein AT AT2G21300

Glyma04g24300

T3/T7 BACTERIOPHAGE-RELATED MITOCHODRIAL DNA-DIRECTED RNA POLYMERASE Panther PTHR10102
DNA-directed RNA polymerase activity Panther PTHR10102
DNA/RNA polymerases superfamily protein AT AT2G24120

Glyma04g24350

DNA-dependent RNA polymerase PFAM PF00940
T3/T7 BACTERIOPHAGE-RELATED MITOCHODRIAL DNA-DIRECTED RNA POLYMERASE Panther PTHR10102
DNA-directed RNA polymerase activity PFAM PF00940
DNA-directed RNA polymerase activity Panther PTHR10102
DNA/RNA polymerases superfamily protein AT AT2G24120

Glyma04g24361

Glyma04g24371

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Tetratricopeptide repeat (TPR)-like superfamily protein AT AT4G30825

Glyma04g24380

Serine carboxypeptidase PFAM PF00450
SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE Panther PTHR11802
Serine carboxypeptidases (lysosomal cathepsin A) KOG KOG1282
Carboxypeptidase D. EC 3.4.16.6
KO K01288
serine-type carboxypeptidase activity PFAM PF00450
serine-type carboxypeptidase activity Panther PTHR11802
Serine carboxypeptidases (lysosomal cathepsin A) KOG KOG1282
serine carboxypeptidase-like 29 AT AT4G30810

Glyma04g24410

Peptidase C13 family PFAM PF01650
HEMOGLOBINASE FAMILY MEMBER Panther PTHR12000
Gpi-anchor transamidase KOG KOG1349
cysteine-type endopeptidase activity PFAM PF01650
cysteine-type endopeptidase activity Panther PTHR12000
Gpi-anchor transamidase KOG KOG1349
Peptidase C13 family AT AT1G08750

Glyma04g24420

Haemolysin-III related PFAM PF03006
ADIPOR/PROGESTIN RECEPTOR-RELATED Panther PTHR20855
Predicted membrane proteins, contain hemolysin III domain KOG KOG0748
integral to membrane PFAM PF03006
integral to membrane Panther PTHR20855
Predicted membrane proteins, contain hemolysin III domain KOG KOG0748
heptahelical transmembrane protein2 AT AT4G30850

Glyma04g24430

Ataxin-2 C-terminal region PFAM PF07145
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT (EIF-3) Panther PTHR12601
Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 KOG KOG1839
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT (EIF-3) Panther PTHR12601
Tetratricopeptide repeat (TPR)-like superfamily protein AT AT4G28080