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Integrating Genetics and Genomics to Advance Soybean Research

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Genes Covered By A Chromosome Alteration FN0164160.03.02.01.01.M6.4

Gene NameGene Annotation
Glyma04g41540
  • Pyridine nucleotide-disulphide oxidoreductasePFAMPF00070
  • FAD NADPH DEHYDROGENASE/OXIDOREDUCTASEPantherPTHR11938
  • Glutamate synthaseKOGKOG0399
  • Glutamate synthase (NADPH).EC1.4.1.13
  • E1.4.1.13L, gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13 ] [COG:COG0067 COG0069 COG0070 ] [GO:0004355 ]KOK00265
  • E1.4.1.13S, gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13 ] [COG:COG0493 ] [GO:0004355 ]KOK00266
  • Activity=glutamate synthase (NADH); Pathway=glutamate biosynthesis IVSoyCycGLUGLNSYN-PWY
  • Activity=glutamate synthase (NADH); Pathway=superpathway of ammonia assimilation (plants)SoyCycPWY-3282
  • Activity=glutamate synthase (NADH); Pathway=ammonia assimilation cycle ISoyCycPWY-6963
  • plastidGOGO:0009536
  • glutamate biosynthetic processGOGO:0006537
  • chloroplast stromaGOGO:0009570
  • chloroplastGOGO:0009507
  • response to cadmium ionGOGO:0046686
  • nitrate assimilationGOGO:0042128
  • developmental growthGOGO:0048589
  • ammonia assimilation cycleGOGO:0019676
  • glutamate synthase (NADH) activityGOGO:0016040
  • Activity=Glutamate synthase NADH; Pathway=Glutamate and glutamine biosynthesisSoyCycPWY-5505
  • Activity=Glutamate synthase NADH; Pathway=Glutamate biosynthesis IVSoyCycGLUGLNSYN-PWY
  • Activity=Glutamate synthase NADH; Pathway=ammonia assimilation cycle IISoyCycPWY-3282
  • metabolic processPFAMPF00310
  • glutamate synthase activityPFAMPF04898
  • glutamate synthase activityPFAMPF01645
  • oxidoreductase activityPFAMPF01493
  • Pyridine nucleotide-disulphide oxidoreductasePFAMPF07992
  • flavin adenine dinucleotide bindingPFAMPF00070
  • Flavin containing amine oxidoreductasePFAMPF01593
  • FAD NADPH DEHYDROGENASE/OXIDOREDUCTASEPantherPTHR11938
  • Glutamate synthaseKOGKOG0399
  • glutamate synthase (NADPH)EC1.4.1.13
  • glutamate synthase (NADH)EC1.4.1.14
  • glutamate synthase (NADPH/NADH) [EC:1.4.1.13 1.4.1.14]KOK00264
  • NADH-dependent glutamate synthase 1ATAT5G53460
Glyma04g41570
  • GHMP kinases C terminalPFAMPF08544
  • Phosphomevalonate kinaseKOGKOG4519
  • Phosphomevalonate kinase.EC2.7.4.2
  • E2.7.4.2, mvaK2; phosphomevalonate kinase [EC:2.7.4.2 ] [COG:COG1577 ] [GO:0004631 ]KOK00938
  • Activity=phosphomevalonate_kinase; Pathway=mevalonate pathway ISoyCycPWY-922
  • Activity=phosphomevalonate_kinase; Pathway=superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)SoyCycPWY-5910
  • Activity=phosphomevalonate_kinase; Pathway=mevalonate pathwaySoyCycPWY-922
  • Activity=phosphomevalonate_kinase; Pathway=superpathway of geranylgeranyldiphosphate biosynthesis I via mevalonateSoyCycPWY-5910
  • kinase activityPFAMPF00288
  • GHMP kinases C terminalPFAMPF08544
  • Phosphomevalonate kinaseKOGKOG4519
  • phosphomevalonate kinaseEC2.7.4.2
  • phosphomevalonate kinase [EC:2.7.4.2]KOK00938
  • GHMP kinase family proteinATAT1G31910
Glyma04g41580
  • Protein of unknown function (DUF668)PFAMPF05003
  • Domain of unknown function (DUF3475)PFAMPF11961
  • Protein of unknown function (DUF668)PFAMPF05003
  • Protein of unknown function (DUF668)ATAT5G04550
Glyma04g41590
  • Methyltransferase domainPFAMPF08242
  • MRNA (GUANINE-7-)METHYLTRANSFERASEPantherPTHR12189
  • mRNA cappingPFAMPF03291
  • methyltransferase activityPFAMPF08241
  • MRNA (GUANINE-7-)METHYLTRANSFERASEPantherPTHR12189
  • mRNA (guanine-N7-)-methyltransferaseEC2.1.1.56
  • mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56]KOK00565
  • S-adenosyl-L-methionine-dependent methyltransferases superfamily proteinATAT3G52210
Glyma04g41600
  • Spermine/spermidine synthasePFAMPF01564
  • SPERMIDINE SYNTHASEPantherPTHR11558
  • Spermidine synthaseKOGKOG1562
  • Activity=spermine synthase; Pathway=spermine biosynthesisSoyCycARGSPECAT-PWY
  • Activity=spermine synthase; Pathway=spermidine biosynthesis ISoyCycBSUBPOLYAMSYN-PWY
  • Activity=spermine synthase; Pathway=spermine biosynthesisSoyCycARGSPECAT-PWY
  • Activity=spermine synthase; Pathway=spermidine biosynthesisSoyCycBSUBPOLYAMSYN-PWY
  • Activity=spermine synthase; Pathway=superpathway of polyamine biosynthesis IISoyCycPOLYAMINSYN3-PWY
  • Activity=spermine synthase; Pathway=superpathway of polyamine biosynthesis ISoyCycPOLYAMSYN-PWY
  • Activity=spermine synthase; Pathway=superpathway of arginine and polyamine biosynthesisSoyCycARG+POLYAMINE-SYN
  • catalytic activityPFAMPF01564
  • catalytic activityPantherPTHR11558
  • Spermidine synthaseKOGKOG1562
  • spermidine synthaseEC2.5.1.16
  • spermidine synthase [EC:2.5.1.16]KOK00797
  • spermidine synthase 3ATAT5G53120
Glyma04g41610
  • Cyclic nucleotide-binding domainPFAMPF00027
  • VOLTAGE AND LIGAND GATED POTASSIUM CHANNELPantherPTHR10217
  • K+-channel ERG and related proteins, contain PAS/PAC sensor domainKOGKOG0498
  • CNGF; cyclic nucleotide gated channel, other eukaryoteKOK05391
  • Cyclic nucleotide-binding domainPFAMPF00027
  • VOLTAGE AND LIGAND GATED POTASSIUM CHANNELPantherPTHR10217
  • K+-channel ERG and related proteins, contain PAS/PAC sensor domainKOGKOG0498
  • cyclic nucleotide gated channel, other eukaryoteKOK05391
  • cyclic nucleotide gated channel 1ATAT5G53130
Glyma04g41620
  • short chain dehydrogenasePFAMPF00106
  • SHORT-CHAIN DEHYDROGENASES/REDUCTASEPantherPTHR19410
  • Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)KOGKOG1208
  • oxidoreductase activityPFAMPF00106
  • SHORT-CHAIN DEHYDROGENASES/REDUCTASEPantherPTHR19410
  • Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)KOGKOG1208
  • NAD(P)-binding Rossmann-fold superfamily proteinATAT5G04070
  • 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3KOGKOG1014
Glyma04g41630
Glyma04g41641
Glyma04g41651
  • trehalose biosynthetic processPFAMPF02358
  • TREHALOSE-6-PHOSPHATE SYNTHASEPantherPTHR10788
  • trehalose-6-phosphate phosphataseATAT1G78090
Glyma04g41660
  • RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)PFAMPF00076
  • HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINPantherPTHR11546
  • Polypyrimidine tract-binding proteinKOGKOG1190
  • nucleic acid bindingPFAMPF00076
  • HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINPantherPTHR11546
  • Polypyrimidine tract-binding proteinKOGKOG1190
  • polypyrimidine tract-binding protein 2ATAT5G53180






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