Genes Covered By A Chromosome Alteration FN0163764.04.03.M4.3

Gene Name

Gene Annotation

Glyma11g08070

Auxin responsive protein PFAM PF02519
Auxin responsive protein PFAM PF02519
SAUR family protein KO K14488
SAUR-like auxin-responsive protein family AT AT4G38860

Glyma11g08080

Glyma11g08091

sequence-specific DNA binding PFAM PF00046
Homeodomain-like superfamily protein AT AT2G17950

Glyma11g08100

AT AT2G17990

Glyma11g08110

YEATS family PFAM PF03366
YEATS DOMAIN Panther PTHR23195
Transcription initiation factor IIF, auxiliary subunit KOG KOG3149
nucleus PFAM PF03366
nucleus Panther PTHR23195
Transcription initiation factor IIF, auxiliary subunit KOG KOG3149
YEATS family protein AT AT5G45600

Glyma11g08120

Plant protein of unknown function (DUF827) AT AT2G17940

Glyma11g08131

Glyma11g08140

FATC domain PFAM PF02260
ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED Panther PTHR11139
Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily KOG KOG0889
transformation/transcription domain-associated protein KO K08874
protein binding PFAM PF02259
phosphotransferase activity, alcohol group as acceptor PFAM PF00454
ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED Panther PTHR11139
Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily KOG KOG0889
transformation/transcription domain-associated protein KO K08874
Phosphatidylinositol 3- and 4-kinase family protein with FAT domain AT AT2G17930

Glyma11g08160

Chalcone-flavanone isomerase family protein AT AT5G66230

Glyma11g08180

EF hand PFAM PF00036
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily KOG KOG0032
ATP binding GO GO:0005524
protein phosphorylation GO GO:0006468
calmodulin-dependent protein kinase activity GO GO:0004683
calcium ion binding GO GO:0005509
protein serine/threonine kinase activity GO GO:0004674
protein kinase activity GO GO:0004672
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily KOG KOG0032
calcium-dependent protein kinase 28 AT AT5G66210

Glyma11g08190

DnaJ domain PFAM PF00226
DNAJ/HSP40 Panther PTHR11821
heat shock protein binding PFAM PF00226
DNAJ/HSP40 Panther PTHR11821
Chaperone DnaJ-domain superfamily protein AT AT4G36040

Glyma11g08210

Armadillo/beta-catenin-like repeat PFAM PF00514
IMPORTIN ALPHA-RELATED Panther PTHR23316
protein binding PFAM PF00514
IMPORTIN ALPHA-RELATED Panther PTHR23316
armadillo repeat only 2 AT AT5G66200

Glyma11g08230

Oxidoreductase NAD-binding domain PFAM PF00175
NADPH FLAVIN OXIDOREDUCTASE Panther PTHR19384
Ferredoxin--NADP(+) reductase. EC 1.18.1.2
PETH; ferredoxin--NADP+ reductase [EC:1.18.1.2 ] [COG:COG0369 ] [GO:0004324 ] KO K02641
photosynthetic electron transport chain GO GO:0009767
apoplast GO GO:0048046
poly(U) RNA binding GO GO:0008266
electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity GO GO:0045157
defense response to bacterium GO GO:0042742
electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity GO GO:0045156
chloroplast envelope GO GO:0009941
chloroplast GO GO:0009507
thylakoid lumen GO GO:0031977
thylakoid GO GO:0009579
oxidation-reduction process GO GO:0055114
oxidoreductase activity GO GO:0016491
chloroplast stroma GO GO:0009570
chloroplast thylakoid membrane GO GO:0009535
NADPH dehydrogenase activity GO GO:0003959
protein binding GO GO:0005515

Activity=electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis; Pathway=oxygenic photosynthesis

SoyCyc

PHOTOALL-PWY

SoyCyc

PWY-101

oxidoreductase activity PFAM PF00970
oxidoreductase activity PFAM PF00175
NADPH FLAVIN OXIDOREDUCTASE Panther PTHR19384
ferredoxinÂ—NADP+ reductase EC 1.18.1.2
ferredoxin--NADP+ reductase [EC:1.18.1.2] KO K02641
ferredoxin-NADP(+)-oxidoreductase 1 AT AT5G66190

Glyma11g08240

Thaumatin family PFAM PF00314
Thaumatin family PFAM PF00314
Pathogenesis-related thaumatin superfamily protein AT AT4G36010

Glyma11g08250

Thaumatin family PFAM PF00314
Thaumatin family PFAM PF00314
Pathogenesis-related thaumatin superfamily protein AT AT4G38660

Glyma11g08260

Rhodanese-like domain PFAM PF00581
FAMILY NOT NAMED Panther PTHR13253
Rhodanese-related sulfurtransferase KOG KOG1530
Rhodanese-like domain PFAM PF00581
FAMILY NOT NAMED Panther PTHR13253
Rhodanese-related sulfurtransferase KOG KOG1530
Rhodanese/Cell cycle control phosphatase superfamily protein AT AT2G17850

Glyma11g08275

cell death PFAM PF03094
Seven transmembrane MLO family protein AT AT1G11000

Glyma11g08290

Ubiquitin interaction motif PFAM PF02809
26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 Panther PTHR10223
26S proteasome regulatory complex, subunit RPN10/PSMD4 KOG KOG2884
RPN10, PSMD4; 26S proteasome regulatory subunit N10 KO K03029
Ubiquitin interaction motif PFAM PF02809
26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 Panther PTHR10223
26S proteasome regulatory complex, subunit RPN10/PSMD4 KOG KOG2884
26S proteasome regulatory subunit N10 KO K03029
regulatory particle non-ATPase 10 AT AT4G38630

Glyma11g08300

Senescence-associated protein PFAM PF06911
FAMILY NOT NAMED Panther PTHR21068
Senescence-associated protein PFAM PF06911
FAMILY NOT NAMED Panther PTHR21068
Senescence/dehydration-associated protein-related AT AT2G17840

Glyma11g08310

Response regulator receiver domain PFAM PF00072
SENSOR HISTIDINE KINASE-RELATED Panther PTHR23283
Sensory transduction histidine kinase KOG KOG0519
two-component sensor activity PFAM PF00512
ATP binding PFAM PF02518
two-component response regulator activity PFAM PF00072
SENSOR HISTIDINE KINASE-RELATED Panther PTHR23283
Sensory transduction histidine kinase KOG KOG0519
histidine kinase 1 AT AT2G17820

Glyma11g08320

Peroxidase PFAM PF00141
peroxidase activity PFAM PF00141
ascorbate peroxidase 3 AT AT4G35000

Glyma11g08330

Protein of unknown function (DUF632) PFAM PF04782
UNCHARACTERIZED Panther PTHR21450
Protein of unknown function (DUF630) PFAM PF04783
Protein of unknown function (DUF632) PFAM PF04782
UNCHARACTERIZED Panther PTHR21450
Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) AT AT3G51290

Glyma11g08340

AT AT2G24960

Glyma11g08350

3-dehydroquinate synthase PFAM PF01761
AROM/DEHYDROQUINATE SYNTHASE Panther PTHR21090
3-dehydroquinate synthase EC 4.2.3.4
E4.2.3.4, ARO1; 3-dehydroquinate synthase [EC:4.2.3.4 ] [COG:COG0337 ] [GO:0003856 ] KO K01735
chloroplast GO GO:0009507
carbon-oxygen lyase activity, acting on phosphates GO GO:0016838
biosynthetic process GO GO:0009058
aromatic amino acid family biosynthetic process GO GO:0009073
3-dehydroquinate synthase activity GO GO:0003856
Activity=3-dehydroquinate_synthase; Pathway=3-dehydroquinate biosynthesis I SoyCyc PWY-6164
Activity=3-dehydroquinate_synthase; Pathway=chorismate biosynthesis I SoyCyc ARO-PWY
Activity=3-dehydroquinate_synthase; Pathway=chorismate biosynthesis SoyCyc ARO-PWY
Activity=3-dehydroquinate_synthase; Pathway=superpathway of phenylalanine, tyrosine, and tryptophan biosynthesis SoyCyc COMPLETE-ARO-PWY
PFAM PF00465
3-dehydroquinate synthase PFAM PF01761
AROM/DEHYDROQUINATE SYNTHASE Panther PTHR21090
3-dehydroquinate synthase EC 4.2.3.4
3-dehydroquinate synthase [EC:4.2.3.4] KO K01735
3-dehydroquinate synthase, putative AT AT5G66120

Glyma11g08360

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT1G80550

Glyma11g08365

AT AT4G30780

Glyma11g08370

Isocitrate/isopropylmalate dehydrogenase PFAM PF00180
DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE Panther PTHR11835
3-isopropylmalate dehydrogenase KOG KOG0786
3-isopropylmalate dehydrogenase. EC 1.1.1.85
E1.1.1.85, leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85 ] [COG:COG0473 ] [GO:0003862 ] KO K00052
Activity=3-isopropylmalate dehydrogenase; Pathway=superpathway of leucine, valine, and isoleucine biosynthesis SoyCyc BRANCHED-CHAIN-AA-SYN-PWY
Activity=3-isopropylmalate dehydrogenase; Pathway=leucine biosynthesis SoyCyc LEUSYN-PWY
Activity=3-isopropylmalate dehydrogenase; Pathway=leucine biosynthesis SoyCyc LEUSYN-PWY
Activity=3-isopropylmalate dehydrogenase; Pathway=superpathway of leucine, valine, and isoleucine biosynthesis SoyCyc BRANCHED-CHAIN-AA-SYN-PWY
Isocitrate/isopropylmalate dehydrogenase PFAM PF00180
NAD binding Panther PTHR11835
3-isopropylmalate dehydrogenase KOG KOG0786
3-isopropylmalate dehydrogenase EC 1.1.1.85
3-isopropylmalate dehydrogenase [EC:1.1.1.85] KO K00052
isopropylmalate dehydrogenase 2 AT AT1G80560

Glyma11g08380

Miro-like protein PFAM PF08477
RAS-RELATED GTPASE Panther PTHR11708
Ras-related small GTPase, Rho type KOG KOG0393
Rho family, other KO K07975
protein kinase binding GO GO:0019901
small GTPase mediated signal transduction GO GO:0007264
GTPase activity GO GO:0003924
establishment of vesicle localization GO GO:0051650
apical part of cell GO GO:0045177
GTPase activating protein binding GO GO:0032794
regulation of exocytosis GO GO:0017157
regulation of actin filament depolymerization GO GO:0030834
regulation of actin filament polymerization GO GO:0030833
nucleolus GO GO:0005730
plasma membrane GO GO:0005886
auxin mediated signaling pathway GO GO:0009734
protein binding GO GO:0005515
pollen tube growth GO GO:0009860
phragmoplast GO GO:0009524
cytoplasm GO GO:0005737
spindle GO GO:0005819
nucleus GO GO:0005634
GTP binding GO GO:0005525
abscisic acid mediated signaling pathway GO GO:0009738
Ras family PFAM PF00071
Miro-like protein PFAM PF08477
RAS-RELATED GTPASE Panther PTHR11708
Ras-related small GTPase, Rho type KOG KOG0393
Rho family, other KO K07975
RHO-related protein from plants 1 AT AT3G51300

Glyma11g08390

Vacuolar protein sorting-associated protein 35 PFAM PF03635
VACUOLAR SORTING PROTEIN 35 Panther PTHR11099
Membrane coat complex Retromer, subunit VPS35 KOG KOG1107
Vacuolar protein sorting-associated protein 35 PFAM PF03635
VACUOLAR SORTING PROTEIN 35 Panther PTHR11099
Membrane coat complex Retromer, subunit VPS35 KOG KOG1107
VPS35 homolog A AT AT2G17790

Glyma11g08400

Heavy-metal-associated domain PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
metal ion transport PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
Heavy metal transport/detoxification superfamily protein AT AT5G66110

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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