Genes Covered By A Chromosome Alteration FN0161800.02.M3.2

Gene Name

Gene Annotation

Glyma12g05821

hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00232
hydrolase activity, hydrolyzing O-glycosyl compounds Panther PTHR10353
Beta-glucosidase, lactase phlorizinhydrolase, and related proteins KOG KOG0626
beta glucosidase 15 AT AT2G44450

Glyma12g05830

Glycosyl hydrolase family 1 PFAM PF00232
GLYCOSIDE HYDROLASES Panther PTHR10353
Beta-glucosidase, lactase phlorizinhydrolase, and related proteins KOG KOG0626
Activity=beta-primeverosidase; Pathway=linamarin degradation SoyCyc PWY-3121
Activity=beta-primeverosidase; Pathway=lotaustralin degradation SoyCyc PWY-6002
hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00232
hydrolase activity, hydrolyzing O-glycosyl compounds Panther PTHR10353
Beta-glucosidase, lactase phlorizinhydrolase, and related proteins KOG KOG0626
beta glucosidase 13 AT AT5G44640

Glyma12g05833

hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00232
hydrolase activity, hydrolyzing O-glycosyl compounds Panther PTHR10353
beta glucosidase 12 AT AT5G42260

Glyma12g05836

hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00232
hydrolase activity, hydrolyzing O-glycosyl compounds Panther PTHR10353
beta glucosidase 40 AT AT1G26560

Glyma12g05840

Lipoxygenase PFAM PF00305
LIPOXYGENASE Panther PTHR11771
Activity=phytoene dehydrogenase; Pathway=jasmonic acid biosynthesis SoyCyc PWY-735
Activity=phytoene dehydrogenase; Pathway=traumatin and (Z)-3-hexen-1-yl acetate biosynthesis SoyCyc PWY-5410
Activity=phytoene dehydrogenase; Pathway=divinyl ether biosynthesis II 13-LOX SoyCyc PWY-5409
Activity=phytoene dehydrogenase; Pathway=trans-lycopene biosynthesis SoyCyc PWY-5942
Activity=phytoene dehydrogenase; Pathway=13-LOX and 13-HPL pathway SoyCyc PWY-5410
Activity=phytoene dehydrogenase; Pathway=superpathway of carotenoid biosynthesis SoyCyc CAROTENOID-PWY
Activity=phytoene dehydrogenase; Pathway=superpathway of lipoxygenase SoyCyc PWY-5433
Activity=phytoene dehydrogenase; Pathway=jasmonic acid biosynthesis SoyCyc PWY-735
protein binding PFAM PF01477
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen PFAM PF00305
metal ion binding Panther PTHR11771
lipoxygenase 2 AT AT3G45140

Glyma12g05856

catalytic activity PFAM PF00501
cofactor binding PFAM PF00550
DISCO-INTERACTING PROTEIN 2 (DIP2)-RELATED Panther PTHR22754
Acyl-CoA synthetase KOG KOG1176
AMP-dependent synthetase and ligase family protein AT AT1G20480

Glyma12g05873

Glyma12g05890

HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED Panther PTHR12461
Uncharacterized conserved protein, contains JmjC domain KOG KOG2132
Cupin superfamily protein PFAM PF08007
JmjC domain PFAM PF02373
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED Panther PTHR12461
Uncharacterized conserved protein, contains JmjC domain KOG KOG2132
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein AT AT3G20810

Glyma12g05900

AT AT5G12900

Glyma12g05910

Core histone H2A/H2B/H3/H4 PFAM PF00125
HISTONE H3 Panther PTHR11426
Histones H3 and H4 KOG KOG1745
chloroplast GO GO:0009507
nucleosome assembly GO GO:0006334
nucleosome GO GO:0000786
DNA binding GO GO:0003677
protein binding GO GO:0005515
DNA binding PFAM PF00125
nucleosome Panther PTHR11426
Histones H3 and H4 KOG KOG1745
histone H3 KO K11253
Histone superfamily protein AT AT5G10400

Glyma12g05920

AT AT4G12070

Glyma12g05930

Helix-loop-helix DNA-binding domain PFAM PF00010
transcription regulator activity PFAM PF00010
basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT AT1G51140

Glyma12g05940

Leucine Rich Repeat PFAM PF00560
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue KOG KOG4579
Leucine rich repeat N-terminal domain PFAM PF08263
protein binding PFAM PF00560
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue KOG KOG4579
Leucine-rich repeat (LRR) family protein AT AT3G20820

Glyma12g05950

Leucine Rich Repeat PFAM PF00560
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine rich repeat N-terminal domain PFAM PF08263
protein binding PFAM PF00560
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine-rich repeat (LRR) family protein AT AT3G20820

Glyma12g05960

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT2G13600

Glyma12g05980

Putative glycosyl hydrolase of unknown function (DUF1680) PFAM PF07944
hypothetical protein KO K09955
Putative glycosyl hydrolase of unknown function (DUF1680) PFAM PF07944
hypothetical protein KO K09955
Putative glycosyl hydrolase of unknown function (DUF1680) AT AT5G12950

Glyma12g05990

Protein kinase domain PFAM PF00069
SERINE/THREONINE PROTEIN KINASE Panther PTHR22985
Putative serine/threonine protein kinase KOG KOG0610
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE/THREONINE PROTEIN KINASE Panther PTHR22985
Putative serine/threonine protein kinase KOG KOG0610
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT AT3G20830

Glyma12g05995

Glyma12g06000

BAX INHIBITOR 1 Panther PTHR23291:SF4
BAX INHIBITOR 1 Panther PTHR23291:SF4
BAX inhibitor 1 AT AT5G47120

Glyma12g06010

AP2 domain PFAM PF00847
AP2-like factor, ANT lineage KO K09285
sequence-specific DNA binding transcription factor activity PFAM PF00847
AP2-like factor, ANT lineage KO K09285
Integrase-type DNA-binding superfamily protein AT AT1G51190

Glyma12g06016

zinc ion binding PFAM PF01754
zinc ion binding PFAM PF01428
PRK1-ASSOCIATED ZINC FINGER PROTEIN Panther PTHR10634
Predicted Zn-finger protein KOG KOG3173
A20/AN1-like zinc finger family protein AT AT1G51200

Glyma12g06023

Glyma12g06030

Glyma12g06050

CcmE PFAM PF03100
protein-heme linkage PFAM PF03100
transmembrane protein G1P-related 1 AT AT3G51790

Glyma12g06060

GUFA PROTEIN - RELATED Panther PTHR11065
metal ion transport PFAM PF02535
GUFA PROTEIN - RELATED Panther PTHR11065
ZIP metal ion transporter family AT AT3G20870

Glyma12g06080

Zinc finger, C2H2 type PFAM PF00096
ZINC FINGER PROTEIN Panther PTHR11389
C2H2-type Zn-finger protein KOG KOG2462
ZINC FINGER PROTEIN Panther PTHR11389
C2H2-type Zn-finger protein KOG KOG2462
WIP domain protein 5 AT AT1G51220

Glyma12g06090

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 6/12/38 Panther PTHR14155
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 6/12/38 Panther PTHR14155
RING/U-box superfamily protein AT AT3G63530

Glyma12g06101

EXTENSIN, PROLINE-RICH PROTEIN Panther PTHR23201

Glyma12g06111

Glyma12g06120

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PFAM PF00076
RNA-BINDING PROTEIN Panther PTHR10432
Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) KOG KOG0148
Splicing factor 3b, subunit 4 KOG KOG0131
nucleic acid binding PFAM PF00076
RNA-BINDING PROTEIN Panther PTHR10432
Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) KOG KOG0148
RNA-binding (RRM/RBD/RNP motifs) family protein AT AT5G19350

Glyma12g06130

Aldehyde dehydrogenase family PFAM PF00171
ALDEHYDE DEHYDROGENASE-RELATED Panther PTHR11699
Aldehyde dehydrogenase KOG KOG2456
Activity=3-chloroallyl aldehyde dehydrogenase; Pathway=β-alanine biosynthesis I SoyCyc PWY-3981
Activity=3-chloroallyl aldehyde dehydrogenase; Pathway=ethanol degradation IV SoyCyc PWY66-162
Activity=3-chloroallyl aldehyde dehydrogenase; Pathway=ethanol degradation II SoyCyc PWY66-21
oxidoreductase activity PFAM PF00171
ALDEHYDE DEHYDROGENASE-RELATED Panther PTHR11699
Aldehyde dehydrogenase KOG KOG2456
aldehyde dehydrogenase 3F1 AT AT4G36250

Glyma12g06150

Miro-like protein PFAM PF08477
MSS1/TRME-RELATED GTP-BINDING PROTEIN Panther PTHR11649
Mitochondrial GTPase KOG KOG1191
ferrous iron transmembrane transporter activity PFAM PF02421
GTP binding PFAM PF04548
GTP binding PFAM PF01926
Miro-like protein PFAM PF08477
GTP binding PFAM PF00009
MSS1/TRME-RELATED GTP-BINDING PROTEIN Panther PTHR11649
Mitochondrial GTPase KOG KOG1191
GTP-binding family protein AT AT3G12080

Glyma12g06161

asparagine synthase (glutamine-hydrolyzing) activity PFAM PF00733
tRNA processing PFAM PF03054
tRNA processing Panther PTHR11933
transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases AT AT1G51310

Glyma12g06170

NOGCT (NUC087) domain PFAM PF08155
DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED Panther PTHR11702
GTP-binding protein CRFG/NOG1 (ODN superfamily) KOG KOG1490
ferrous iron transmembrane transporter activity PFAM PF02421
Miro-like protein PFAM PF08477
GTP binding PFAM PF01926
GTP binding PFAM PF06858
NOGCT (NUC087) domain PFAM PF08155
DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED Panther PTHR11702
GTP-binding protein CRFG/NOG1 (ODN superfamily) KOG KOG1490
Nucleolar GTP-binding protein AT AT1G50920

Glyma12g06180

Myb-like DNA-binding domain PFAM PF00249
MYB-RELATED Panther PTHR10641
Myb-like DNA-binding domain PFAM PF00249
MYB-RELATED Panther PTHR10641
Transcription factor, Myb superfamily KOG KOG0048
myb domain protein 83 AT AT3G08500

Glyma12g06190

Sodium:sulfate symporter transmembrane region PFAM PF00939
CATION TRANSPORTER RELATED Panther PTHR10283
sodium ion transport PFAM PF00939
CATION TRANSPORTER RELATED Panther PTHR10283
dicarboxylate transporter 1 AT AT5G12860

Glyma12g06200

SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein phosphorylation PFAM PF00069
protein phosphorylation PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein kinase protein with tetratricopeptide repeat domain AT AT5G59010

Glyma12g06210

Hsp20/alpha crystallin family PFAM PF00011
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY Panther PTHR11527
Molecular chaperone (small heat-shock protein Hsp26/Hsp42) KOG KOG0710
Hsp20/alpha crystallin family PFAM PF00011
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY Panther PTHR11527
Molecular chaperone (small heat-shock protein Hsp26/Hsp42) KOG KOG0710
HSP20-like chaperones superfamily protein AT AT1G07400

Glyma12g06221

transferase activity, transferring hexosyl groups PFAM PF00201
transferase activity, transferring hexosyl groups Panther PTHR11926
UDP-glucuronosyl and UDP-glucosyl transferase KOG KOG1192
UDP-glucosyl transferase 76E2 AT AT5G59590

Glyma12g06231

AT AT5G59050

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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