Genes Covered By A Chromosome Alteration FN0141793.M2.2

Gene Name

Gene Annotation

Glyma06g32786

Glyma06g32802

NADH dehydrogenase (ubiquinone) activity PFAM PF01010
NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein AT ATCG01010

Glyma06g32818

HELICASE-RELATED Panther PTHR10492

Glyma06g32834

PIF1 helicase PFAM PF05970
HELICASE-RELATED Panther PTHR10492
PIF1 helicase AT AT3G51700

Glyma06g32850

Tetratricopeptide repeat PFAM PF00515
ANAPHASE PROMOTING COMPLEX SUBUNIT Panther PTHR12558
Anaphase-promoting complex (APC), Cdc16 subunit KOG KOG1173
APC6, CDC16; anaphase-promoting complex component APC6 [GO:0004842 ] KO K03353
regulation of DNA endoreduplication GO GO:0032875
cell cycle GO GO:0007049
phloem or xylem histogenesis GO GO:0010087
cellular_component GO GO:0005575
binding GO GO:0005488
Tetratricopeptide repeat PFAM PF07719
protein binding PFAM PF00515
ANAPHASE PROMOTING COMPLEX SUBUNIT Panther PTHR12558
Anaphase-promoting complex (APC), Cdc16 subunit KOG KOG1173
anaphase-promoting complex subunit 6 KO K03353
anaphase promoting complex 6 AT AT1G78770

Glyma06g32860

Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A PFAM PF12222
Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein AT AT3G14920

Glyma06g32870

FAMILY NOT NAMED Panther PTHR12472
RAB3-GAP REGULATORY DOMAIN Panther PTHR12472
AT AT3G14910

Glyma06g33080

Polynucleotide kinase 3 phosphatase PFAM PF08645
POLYNUCLEOTIDE KINASE- 3'-PHOSPHATASE Panther PTHR12083
Polynucleotide 5'-hydroxyl-kinase. EC 2.7.1.78
bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] KO K08073
Polynucleotide 3'-phosphatase. EC 3.1.3.32
KO K08075
Polynucleotide kinase 3 phosphatase PFAM PF08645
POLYNUCLEOTIDE KINASE- 3'-PHOSPHATASE Panther PTHR12083
phosphoesterase AT AT3G14890

Glyma06g33101

AT AT1G78810

Glyma06g33120

Glyma06g33130

GRAM domain PFAM PF02893
GRAM domain PFAM PF02893
FH interacting protein 1 AT AT1G28200

Glyma06g33192

PIF1 helicase PFAM PF05970
viral genome replication PFAM PF02689
HELICASE-RELATED Panther PTHR10492
PIF1 helicase AT AT3G51690

Glyma06g33254

HELICASE-RELATED Panther PTHR10492

Glyma06g33317

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
RING/U-box superfamily protein AT AT1G53190

Glyma06g33380

Phosphoenolpyruvate carboxylase PFAM PF00311
Phosphoenolpyruvate carboxylase. EC 4.1.1.31
E4.1.1.31, ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31 ] [COG:COG2352 ] [GO:0008964 ] KO K01595
chloroplast GO GO:0009507
plasma membrane GO GO:0005886
C4 photosynthesis GO GO:0009760
catalytic activity GO GO:0003824
phloem loading GO GO:0009915
protein binding GO GO:0005515
cytosol GO GO:0005829
apoplast GO GO:0048046
carbon fixation GO GO:0015977
tricarboxylic acid cycle GO GO:0006099
phosphoenolpyruvate carboxylase activity GO GO:0008964
Activity=Phosphoenolpyruvate carboxylase; Pathway=glutamine biosynthesis III SoyCyc PWY-6549
Activity=Phosphoenolpyruvate carboxylase; Pathway=gluconeogenesis I SoyCyc GLUCONEO-PWY
Activity=Phosphoenolpyruvate carboxylase; Pathway=CO₂ fixation into oxaloacetate (anapleurotic) SoyCyc PWYQT-4429
Activity=Phosphoenolpyruvate carboxylase; Pathway=Gluconeogenesis SoyCyc GLUCONEO-PWY
Activity=Phosphoenolpyruvate carboxylase; Pathway=C4 photosynthetic carbon assimilation cycle SoyCyc PWY-241
phosphoenolpyruvate carboxylase activity PFAM PF00311
phosphoenolpyruvate carboxylase EC 4.1.1.31
phosphoenolpyruvate carboxylase [EC:4.1.1.31] KO K01595
phosphoenolpyruvate carboxylase 3 AT AT3G14940

Glyma06g33495

NUCLEAR PROTEIN 95 Panther PTHR14140
RING/FYVE/PHD zinc finger superfamily protein AT AT1G43770

Glyma06g33611

mTERF PFAM PF02536
NUCLEOLAR COMPLEX PROTEIN 4 Panther PTHR12455
CCAAT-binding factor AT AT2G17250

Glyma06g33725

Glyma06g33840

Ubiquitin-conjugating enzyme PFAM PF00179
UBIQUITIN-CONJUGATING ENZYME E2 Panther PTHR11621
Ubiquitin-protein ligase KOG KOG0417
Ubiquitin--protein ligase. EC 6.3.2.19
ubiquitin-conjugating enzyme E2 N [EC:6.3.2.19] KO K10580
protein K63-linked ubiquitination GO GO:0070534
positive regulation of ubiquitin-protein ligase activity GO GO:0051443
positive regulation of NF-kappaB transcription factor activity GO GO:0051092
T cell receptor signaling pathway GO GO:0050852
positive regulation of DNA repair GO GO:0045739
post-translational protein modification GO GO:0043687
ubiquitin binding GO GO:0043130
positive regulation of I-kappaB kinase/NF-kappaB cascade GO GO:0043123
regulation of histone ubiquitination GO GO:0033182
UBC13-UEV1A complex GO GO:0035370
positive regulation of histone modification GO GO:0031058
acid-amino acid ligase activity GO GO:0016881
histone ubiquitination GO GO:0016574
ligase activity GO GO:0016874
DNA repair GO GO:0006281
cytosol GO GO:0005829
nucleus GO GO:0005634
cytoplasm GO GO:0005737
ATP binding GO GO:0005524
MyD88-dependent toll-like receptor signaling pathway GO GO:0002755
DNA double-strand break processing GO GO:0000729
double-strand break repair via homologous recombination GO GO:0000724
nucleotide binding GO GO:0000166
ubiquitin ligase complex GO GO:0000151
postreplication repair GO GO:0006301
response to cadmium ion GO GO:0046686
root epidermal cell differentiation GO GO:0010053
response to iron ion GO GO:0010039
UBC13-MMS2 complex GO GO:0031372
plasma membrane GO GO:0005886
protein binding GO GO:0005515
ubiquitin-dependent protein catabolic process GO GO:0006511
ubiquitin-protein ligase activity GO GO:0004842
protein ubiquitination GO GO:0016567
acid-amino acid ligase activity PFAM PF00179
UBIQUITIN-CONJUGATING ENZYME E2 Panther PTHR11621
Ubiquitin-protein ligase KOG KOG0417
ubiquitinÂ—protein ligase EC 6.3.2.19
ubiquitin-conjugating enzyme E2 N [EC:6.3.2.19] KO K10580
ubiquitin-conjugating enzyme 36 AT AT1G16890

Glyma06g33850

Thioredoxin PFAM PF00085
CHAPERONE BINDING PROTEIN Panther PTHR22904
Thioredoxin KOG KOG0907
protein binding PFAM PF00515
cell redox homeostasis PFAM PF00085
CHAPERONE BINDING PROTEIN Panther PTHR22904
Thioredoxin KOG KOG0907
tetratricopetide-repeat thioredoxin-like 1 AT AT1G53300

Glyma06g33880

Galactosyltransferase PFAM PF01762
BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE Panther PTHR11214
Galactosyltransferases KOG KOG2288
galactosyltransferase activity PFAM PF01762
galactosyltransferase activity Panther PTHR11214
Galactosyltransferases KOG KOG2288
Galactosyltransferase family protein AT AT1G53290

Glyma06g33920

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein kinase superfamily protein AT AT1G16670

Glyma06g33940

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PFAM PF00076
RNA-BINDING PROTEIN Panther PTHR10432
RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 KOG KOG4205
nucleic acid binding PFAM PF00076
RNA-BINDING PROTEIN Panther PTHR10432
RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 KOG KOG4205
RNA-binding (RRM/RBD/RNP motifs) family protein AT AT3G15010

Glyma06g33960

Glyma06g33970

AT AT2G31130

Glyma06g33980

Arabidopsis proteins of unknown function PFAM PF03005
SUBFAMILY NOT NAMED Panther PTHR14469:SF1
Arabidopsis proteins of unknown function PFAM PF03005
SUBFAMILY NOT NAMED Panther PTHR14469:SF1
Plant protein of unknown function (DUF828) AT AT1G73140

Glyma06g34190

lactate/malate dehydrogenase, alpha/beta C-terminal domain PFAM PF02866
MALATE AND LACTATE DEHYDROGENASE Panther PTHR11540
NAD-dependent malate dehydrogenase KOG KOG1494
Malate dehydrogenase. EC 1.1.1.37
E1.1.1.37B, mdh; malate dehydrogenase [EC:1.1.1.37 ] [COG:COG0039 ] [GO:0030060 ] KO K00026
membrane GO GO:0016020
apoplast GO GO:0048046
malate dehydrogenase activity GO GO:0016615
copper ion binding GO GO:0005507
chloroplast GO GO:0009507
response to salt stress GO GO:0009651
defense response to bacterium GO GO:0042742
cell wall GO GO:0005618
response to cadmium ion GO GO:0046686
response to cold GO GO:0009409
mitochondrion GO GO:0005739
Activity=malate dehydrogenase; Pathway=gluconeogenesis I SoyCyc GLUCONEO-PWY
Activity=malate dehydrogenase; Pathway=aspartate degradation II SoyCyc MALATE-ASPARTATE-SHUTTLE-PWY
Activity=malate dehydrogenase; Pathway=superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle SoyCyc PWY-5464
Activity=malate dehydrogenase; Pathway=superpathway of glyoxylate cycle and fatty acid degradation SoyCyc PWY-561
Activity=malate dehydrogenase; Pathway=glyoxylate cycle SoyCyc GLYOXYLATE-BYPASS
Activity=malate dehydrogenase; Pathway=TCA cycle II (eukaryotic) SoyCyc PWY-5690
Activity=malate dehydrogenase; Pathway=TCA cycle variation III eukaryotic SoyCyc PWY-5690
Activity=malate dehydrogenase; Pathway=Gluconeogenesis SoyCyc GLUCONEO-PWY
Activity=malate dehydrogenase; Pathway=aspartate degradation II SoyCyc MALATE-ASPARTATE-SHUTTLE-PWY
oxidoreductase activity PFAM PF00056
lactate/malate dehydrogenase, alpha/beta C-terminal domain PFAM PF02866
MALATE AND LACTATE DEHYDROGENASE Panther PTHR11540
NAD-dependent malate dehydrogenase KOG KOG1494
malate dehydrogenase EC 1.1.1.37
malate dehydrogenase [EC:1.1.1.37] KO K00026
Lactate/malate dehydrogenase family protein AT AT1G53240

Glyma06g34210

YEATS DOMAIN Panther PTHR23195
nucleus Panther PTHR23195
YEATS family protein AT AT5G45600

Glyma06g34225

26S PROTEASOME REGULATORY SUBUNIT Panther PTHR10943
26S proteasome regulatory subunit S2 1A AT AT2G20580

Glyma06g34240

Glyma06g34250

FAMILY NOT NAMED Panther PTHR20953
PFAM PF00437
ATP binding PFAM PF00004
ATPase family associated with various cellular activities (AAA) PFAM PF07728
KINASE-RELATED Panther PTHR20953
P-loop containing nucleoside triphosphate hydrolases superfamily protein AT AT1G73170

Glyma06g34285

Glyma06g34320

Glyma06g34330

TCP family transcription factor PFAM PF03634
TCP family transcription factor PFAM PF03634
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 AT AT1G53230

Glyma06g34387

IQ-domain 10 AT AT3G15050

Glyma06g34444

SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine-rich receptor-like protein kinase family protein AT AT1G17230

Glyma06g34502

Glyma06g34561

nucleic acid binding PFAM PF01107

Glyma06g34618

Glyma06g34676

PIF1 helicase PFAM PF05970
viral genome replication PFAM PF02689
HELICASE-RELATED Panther PTHR10492
PIF1 helicase AT AT3G51690

Glyma06g34734

double-stranded RNA binding PFAM PF00035
RIBONUCLEASE III Panther PTHR11207
dsRNA-binding protein 2 AT AT2G28380

Glyma06g34792

gb def: Emb|CAB82814.1 Panther PTHR21596:SF5
Ribonuclease P protein subunit P38-related AT AT5G53020

Glyma06g34850

BAH domain PFAM PF01426
PHD-finger PFAM PF00628
PHD FINGER TRANSCRIPTION FACTOR Panther PTHR12505
positive regulation of flower development GO GO:0009911
zinc ion binding GO GO:0008270
seed germination GO GO:0009845
regulation of transcription, DNA-dependent GO GO:0006355
DNA binding GO GO:0003677
cellular_component GO GO:0005575
DNA binding PFAM PF01426
protein binding PFAM PF00628
PHD FINGER TRANSCRIPTION FACTOR Panther PTHR12505
PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein AT AT4G22140

Glyma06g34861

Glyma06g34871

membrane coat PFAM PF01602
COATOMER GAMMA SUBUNIT Panther PTHR10261
coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative AT AT4G34450

Glyma06g34880

Ligand-gated ion channel PFAM PF00060
IONOTROPIC GLUTAMATE RECEPTOR-RELATED Panther PTHR18966
Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits KOG KOG1052
Receptor family ligand binding region PFAM PF01094
outer membrane-bounded periplasmic space PFAM PF00497
ionotropic glutamate receptor activity PFAM PF00060
IONOTROPIC GLUTAMATE RECEPTOR-RELATED Panther PTHR18966
Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits KOG KOG1052
glutamate receptor 2.7 AT AT2G29120

Glyma06g34890

homogentisate 1,2-dioxygenase PFAM PF04209
HOMOGENTISATE 1,2-DIOXYGENASE Panther PTHR11056
tyrosine metabolic process PFAM PF04209
tyrosine metabolic process Panther PTHR11056
homogentisate 1,2-dioxygenase AT AT5G54080

Glyma06g34900

Ligand-gated ion channel PFAM PF00060
IONOTROPIC GLUTAMATE RECEPTOR-RELATED Panther PTHR18966
Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits KOG KOG1052
Receptor family ligand binding region PFAM PF01094
outer membrane-bounded periplasmic space PFAM PF00497
ionotropic glutamate receptor activity PFAM PF00060
IONOTROPIC GLUTAMATE RECEPTOR-RELATED Panther PTHR18966
Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits KOG KOG1052
glutamate receptor 2.7 AT AT2G29120

Glyma06g34910

Ligand-gated ion channel PFAM PF00060
IONOTROPIC GLUTAMATE RECEPTOR-RELATED Panther PTHR18966
Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits KOG KOG1052
Receptor family ligand binding region PFAM PF01094
outer membrane-bounded periplasmic space PFAM PF00497
ionotropic glutamate receptor activity PFAM PF00060
IONOTROPIC GLUTAMATE RECEPTOR-RELATED Panther PTHR18966
Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits KOG KOG1052
glutamate receptor 2 AT AT4G35290

Glyma06g34920

Ligand-gated ion channel PFAM PF00060
IONOTROPIC GLUTAMATE RECEPTOR-RELATED Panther PTHR18966
Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits KOG KOG1052
Receptor family ligand binding region PFAM PF01094
outer membrane-bounded periplasmic space PFAM PF00497
ionotropic glutamate receptor activity PFAM PF00060
IONOTROPIC GLUTAMATE RECEPTOR-RELATED Panther PTHR18966
Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits KOG KOG1052
glutamate receptor 2.7 AT AT2G29120

Glyma06g34930

Glyma06g34940

homogentisate 1,2-dioxygenase PFAM PF04209
HOMOGENTISATE 1,2-DIOXYGENASE Panther PTHR11056
Homogentisate 1,2-dioxygenase KOG KOG1417
tyrosine metabolic process PFAM PF04209
tyrosine metabolic process Panther PTHR11056
Homogentisate 1,2-dioxygenase KOG KOG1417
homogentisate 1,2-dioxygenase AT AT5G54080

Glyma06g34970

RING/U-box superfamily protein AT AT3G15070
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
RING/U-box superfamily protein AT AT1G53190

Glyma06g34980

Glyma06g34995

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
RING/U-box superfamily protein AT AT1G53190

Glyma06g35010

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
RING/U-box superfamily protein AT AT1G53190

Glyma06g35030

AT AT1G58460

Glyma06g35050

Homeobox associated leucine zipper PFAM PF02183
HOMEOBOX PROTEIN Panther PTHR19418
sequence-specific DNA binding PFAM PF00046
HOMEOBOX PROTEIN Panther PTHR19418
homeobox protein 52 AT AT5G53980

Glyma06g35090

Exonuclease PFAM PF00929
3'-5' EXONUCLEASE ERI1-RELATED Panther PTHR23044
Predicted exonuclease KOG KOG0542
Exonuclease PFAM PF00929
3'-5' EXONUCLEASE ERI1-RELATED Panther PTHR23044
Predicted exonuclease KOG KOG0542
Polynucleotidyl transferase, ribonuclease H-like superfamily protein AT AT3G15140

Glyma06g35101

nucleic acid binding PFAM PF01107

Glyma06g35110

GLUCOSYL/GLUCURONOSYL TRANSFERASES Panther PTHR11926
UDP-glucuronosyl and UDP-glucosyl transferase KOG KOG1192
Activity=flavonol_3-O-glucosyltransferase; Pathway=anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside) SoyCyc PWY-5125
Activity=flavonol_3-O-glucosyltransferase; Pathway=anthocyanin biosynthesis (delphinidin 3-O-glucoside) SoyCyc PWY-5153
Activity=flavonol_3-O-glucosyltransferase; Pathway=kaempferol triglucoside biosynthesis SoyCyc PWY-5348
Activity=flavonol_3-O-glucosyltransferase; Pathway=kaempferol triglucoside biosynthesis SoyCyc PWY-5348
transferase activity, transferring hexosyl groups PFAM PF00201
transferase activity, transferring hexosyl groups Panther PTHR11926
UDP-glucuronosyl and UDP-glucosyl transferase KOG KOG1192
UDP-Glycosyltransferase superfamily protein AT AT4G27570

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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