SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

← Mutant Description Page

Genes Covered By A Chromosome Alteration FN0130342.12.02.M4.1

Gene NameGene Annotation
Glyma18g00300
  • Zinc finger, C3HC4 type (RING finger)PFAMPF00097
  • RING ZINC FINGER PROTEINPantherPTHR22763
  • Zinc finger, C3HC4 type (RING finger)PFAMPF00097
  • RING ZINC FINGER PROTEINPantherPTHR22763
  • RING/U-box superfamily proteinATAT5G56340
Glyma18g00310
  • alpha/beta hydrolase foldPFAMPF00561
  • ALPHA/BETA HYDROLASE RELATEDPantherPTHR10992
  • Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)KOGKOG1454
  • alpha/beta hydrolase foldPFAMPF00561
  • ALPHA/BETA HYDROLASE RELATEDPantherPTHR10992
  • Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)KOGKOG1454
  • alpha/beta-Hydrolases superfamily proteinATAT5G19850
Glyma18g00320
Glyma18g00330
  • Ubiquitin carboxyl-terminal hydrolasePFAMPF00443
  • UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATEDPantherPTHR10420
  • Ubiquitin-specific proteaseKOGKOG1873
  • zinc ion bindingPFAMPF02148
  • ubiquitin thiolesterase activityPFAMPF00443
  • UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATEDPantherPTHR10420
  • Ubiquitin-specific proteaseKOGKOG1873
  • ubiquitin thiolesteraseEC3.1.2.15
  • ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.1.2.15]KOK11844
  • ubiquitin-specific protease 2ATAT1G04860
Glyma18g00350
  • Squalene/phytoene synthasePFAMPF00494
  • Phytoene/squalene synthetaseKOGKOG4411
  • biosynthetic processPFAMPF00494
  • Squalene synthetaseKOGKOG1459
  • PHYTOENE SYNTHASEATAT5G17230
Glyma18g00360
  • PPR repeatPFAMPF01535
  • PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINPantherPTHR10483
  • PPR repeatPFAMPF01535
  • PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINPantherPTHR10483
  • Tetratricopeptide repeat (TPR)-like superfamily proteinATAT5G39980
Glyma18g00370
  • Helicase conserved C-terminal domainPFAMPF00271
  • DEAD BOX ATP-DEPENDENT RNA HELICASEPantherPTHR10967
  • ATP-dependent RNA helicaseKOGKOG0335
  • ATP-dependent helicase activityPFAMPF00270
  • helicase activityPFAMPF00271
  • DEAD BOX ATP-DEPENDENT RNA HELICASEPantherPTHR10967
  • ATP-dependent RNA helicaseKOGKOG0335
  • RNA helicaseEC3.6.4.13
  • ATP-dependent RNA helicase [EC:3.6.4.13]KOK11594
  • P-loop containing nucleoside triphosphate hydrolases superfamily proteinATAT2G42520
Glyma18g00381
  • Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily proteinATAT1G55260
Glyma18g00390
  • RNA-BINDING PROTEIN RELATEDPantherPTHR11208
  • Splicing factor 1/branch point binding protein (RRM superfamily)KOGKOG0119
  • RNA bindingPFAMPF00013
  • RNA-BINDING PROTEIN RELATEDPantherPTHR11208
  • Splicing factor 1/branch point binding protein (RRM superfamily)KOGKOG0119
  • RNA-binding KH domain-containing proteinATAT3G32940
Glyma18g00400
  • Gibberellin regulated proteinPFAMPF02704
  • Gibberellin regulated proteinPFAMPF02704
  • Gibberellin-regulated family proteinATAT2G30810
Glyma18g00410
  • Calcineurin-like phosphoesterasePFAMPF00149
  • ACID PHOSPHATASE RELATEDPantherPTHR22953
  • Purple acid phosphataseKOGKOG1378
  • Activity=4-phytase; Pathway=NAD/NADH phosphorylation and dephosphorylationSoyCycPWY-5083
  • Activity=4-phytase; Pathway=thiamin diphosphate biosynthesis IV (eukaryotes)SoyCycPWY-6908
  • Activity=4-phytase; Pathway=superpathway of thiamin diphosphate biosynthesis III (eukaryotes)SoyCycTHISYNARA-PWY
  • Activity=4-phytase; Pathway=phosphate acquisitionSoyCycPWY-6348
  • Activity=4-phytase; Pathway=phytate degradation ISoyCycPWY-4702
  • Activity=4-phytase; Pathway=phytate degradation IISoyCycPWY-4781
  • Activity=4-phytase; Pathway=phytate degradation ISoyCycPWY-4702
  • hydrolase activityPFAMPF00149
  • ACID PHOSPHATASE RELATEDPantherPTHR22953
  • Purple acid phosphataseKOGKOG1378
  • purple acid phosphatase 15ATAT3G07130
Glyma18g00420
  • Gelsolin repeatPFAMPF00626
  • PROTEIN TRANSPORT PROTEIN SEC23PantherPTHR11141
  • Vesicle coat complex COPII, subunit SEC23KOGKOG1986
  • COPII vesicle coatPFAMPF04810
  • COPII vesicle coatPFAMPF04811
  • Sec23/Sec24 beta-sandwich domainPFAMPF08033
  • COPII vesicle coatPFAMPF04815
  • Gelsolin repeatPFAMPF00626
  • PROTEIN TRANSPORT PROTEIN SEC23PantherPTHR11141
  • Vesicle coat complex COPII, subunit SEC23KOGKOG1986
  • Sec23/Sec24 protein transport family proteinATAT5G43670
Glyma18g00430
  • TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINPantherPTHR22957
  • GTPase-activating proteinKOGKOG4567
  • Rab GTPase activator activityPFAMPF00566
  • TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINPantherPTHR22957
  • GTPase-activating proteinKOGKOG4567
  • Ypt/Rab-GAP domain of gyp1p superfamily proteinATAT1G04830
Glyma18g00440
  • Sodium/hydrogen exchanger familyPFAMPF00999
  • Predicted K+/H+-antiporterKOGKOG1650
  • cation transportPFAMPF00999
  • Predicted K+/H+-antiporterKOGKOG1650
  • cation/H+ exchanger 3ATAT5G22900
Glyma18g00450
Glyma18g00460
  • Rhodanese-like domainPFAMPF00581
  • Rhodanese/Cell cycle control phosphatase superfamily proteinATAT3G59780
Glyma18g00470
Glyma18g00480
  • RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)PFAMPF00076
  • RNA-BINDING PROTEINPantherPTHR10432
  • nucleic acid bindingPFAMPF00076
  • RNA-BINDING PROTEINPantherPTHR10432
  • glycine-rich RNA-binding protein 2ATAT4G13850
Glyma18g00490
Glyma18g00505
  • dTDP-4-dehydrorhamnose reductase activityPFAMPF04321
  • coenzyme bindingPFAMPF01370
  • 3-beta-hydroxy-delta5-steroid dehydrogenase activityPFAMPF01073
  • Male sterility proteinPFAMPF07993
  • NAD DEPENDENT EPIMERASE/DEHYDRATASEPantherPTHR10366
  • UDP-glucose 4-epimerase/UDP-sulfoquinovose synthaseKOGKOG1371
  • UDP-glucuronate 4-epimeraseEC5.1.3.6
  • UDP-glucuronate 4-epimerase [EC:5.1.3.6]KOK08679
  • UDP-D-glucuronate 4-epimerase 6ATAT3G23820
Glyma18g00520
  • 3'-5' exonucleasePFAMPF01612
  • 3-5 EXONUCLEASEPantherPTHR13620
  • nucleobase, nucleoside, nucleotide and nucleic acid metabolic processPFAMPF01612
  • 3-5 EXONUCLEASEPantherPTHR13620
  • Werner syndrome-like exonucleaseATAT4G13870
  • Predicted 3'-5' exonucleaseKOGKOG4373
Glyma18g00530
  • Viral A-type inclusion protein repeatPFAMPF04508
  • KINESIN-RELATEDPantherPTHR18867
  • DNA repair protein RAD50, ABC-type ATPase/SMC superfamilyKOGKOG0962
  • Acting on acid anhydrides.EC3.6.-.-
  • DNA repair protein RAD50 [EC:3.6.-.-]KOK10866
  • nuclease activityPFAMPF04423
  • KINESIN-RELATEDPantherPTHR18867
  • DNA repair protein RAD50, ABC-type ATPase/SMC superfamilyKOGKOG0962
  • Acting on acid anhydrides.EC3.6.-.-
  • DNA repair protein RAD50 [EC:3.6.-.-]KOK10866
  • DNA repair-recombination protein (RAD50)ATAT2G31970
Glyma18g00550
  • Rapid ALkalinization Factor (RALF)PFAMPF05498
  • Rapid ALkalinization Factor (RALF)PFAMPF05498
  • rapid alkalinization factor 1ATAT1G02900
Glyma18g00560
  • Exostosin familyPFAMPF03016
  • EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATEDPantherPTHR11062
  • Acetylglucosaminyltransferase EXT1/exostosin 1KOGKOG1021
  • membranePFAMPF03016
  • EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATEDPantherPTHR11062
  • Acetylglucosaminyltransferase EXT1/exostosin 1KOGKOG1021
  • Exostosin family proteinATAT4G13990
Glyma18g00570
  • UNCHARACTERIZEDPantherPTHR21095
  • Predicted methyltransferaseKOGKOG2920
  • Putative methyltransferasePFAMPF10294
  • UNCHARACTERIZEDPantherPTHR21095
  • Predicted methyltransferaseKOGKOG2920
  • Putative methyltransferase family proteinATAT4G14000
Glyma18g00590
Glyma18g00600
  • Homoserine dehydrogenasePFAMPF00742
  • ASPARTATE KINASEPantherPTHR21499
  • Homoserine dehydrogenaseKOGKOG0455
  • Activity=aspartate kinase; Pathway=superpathway of lysine, threonine and methionine biosynthesis IISoyCycPWY-724
  • Activity=aspartate kinase; Pathway=isoleucine biosynthesis ISoyCycPWY-3001
  • Activity=aspartate kinase; Pathway=lysine biosynthesis VISoyCycPWY-5097
  • Activity=aspartate kinase; Pathway=homoserine biosynthesisSoyCycHOMOSERSYN-PWY
  • Activity=aspartate kinase; Pathway=threonine biosynthesisSoyCycTHRESYN-PWY
  • Activity=aspartate kinase; Pathway=threonine biosynthesisSoyCycTHRESYN-PWY
  • Activity=aspartate kinase; Pathway=isoleucine biosynthesis ISoyCycPWY-3001
  • Activity=aspartate kinase; Pathway=superpathway of lysine, threonine and methionine biosynthesis IISoyCycPWY-724
  • Activity=aspartate kinase; Pathway=homoserine biosynthesisSoyCycHOMOSERSYN-PWY
  • Activity=aspartate kinase; Pathway=lysine biosynthesis VISoyCycPWY-5097
  • Activity=aspartate kinase; Pathway=homoserine and methionine biosynthesisSoyCycMETSYN-PWY
  • Activity=aspartate kinase; Pathway=superpathway of lysine, threonine and methionine biosynthesis ISoyCycP4-PWY
  • Activity=aspartate kinase; Pathway=aspartate superpathwaySoyCycPWY0-781
  • Activity=aspartate kinase; Pathway=methionine and methyl-donor-molecule biosynthesisSoyCycMET-SAM-PWY
  • cellular amino acid biosynthetic processPFAMPF00696
  • amino acid bindingPFAMPF01842
  • NADP bindingPFAMPF03447
  • cellular amino acid metabolic processPFAMPF00742
  • ASPARTATE KINASEPantherPTHR21499
  • Homoserine dehydrogenaseKOGKOG0455
  • aspartate kinase-homoserine dehydrogenase iiATAT4G19710
Glyma18g00610
  • Protein tyrosine kinasePFAMPF07714
  • SERINE-THREONINE PROTEIN KINASE, PLANT-TYPEPantherPTHR23258
  • Serine/threonine protein kinaseKOGKOG1187
  • Leucine rich repeat N-terminal domainPFAMPF08263
  • protein bindingPFAMPF00560
  • protein phosphorylationPFAMPF00069
  • Protein tyrosine kinasePFAMPF07714
  • SERINE-THREONINE PROTEIN KINASE, PLANT-TYPEPantherPTHR23258
  • Serine/threonine protein kinaseKOGKOG1187
  • Leucine-rich repeat protein kinase family proteinATAT3G23750
Glyma18g00620
  • GLUCOSYL/GLUCURONOSYL TRANSFERASESPantherPTHR11926
  • UDP-glucuronosyl and UDP-glucosyl transferaseKOGKOG1192
  • Activity=UDP-glucosyltransferase; Pathway=cytokinins 7-N-glucoside biosynthesisSoyCycPWY-2881
  • Activity=UDP-glucosyltransferase; Pathway=cytokinins-O-glucoside biosynthesisSoyCycPWY-2902
  • Activity=UDP-glucosyltransferase; Pathway=abscisic acid glucose ester biosynthesisSoyCycPWY-5272
  • Activity=UDP-glucosyltransferase; Pathway=cytokinins 9-N-glucoside biosynthesisSoyCycPWY-2901
  • transferase activity, transferring hexosyl groupsPFAMPF00201
  • transferase activity, transferring hexosyl groupsPantherPTHR11926
  • UDP-glucuronosyl and UDP-glucosyl transferaseKOGKOG1192
  • Hexosyltransferases.EC2.4.1.-
  • anthocyanin 5-O-glucosyltransferase [EC:2.4.1.-]KOK12338
  • indole-3-acetate beta-D-glucosyltransferaseATAT4G15550
Glyma18g00630
  • Xyloglucan endo-transglycosylase (XET) C-terminusPFAMPF06955
  • Xyloglucan:xyloglucosyl transferase.EC2.4.1.207
  • xyloglucan:xyloglucosyl transferase [EC:2.4.1.207]KOK08235
  • hydrolase activity, hydrolyzing O-glycosyl compoundsPFAMPF00722
  • cellular glucan metabolic processPFAMPF06955
  • xyloglucan endotransglucosylase/hydrolase 16ATAT3G23730
Glyma18g00643
  • Pentatricopeptide repeat (PPR) superfamily proteinATAT4G14200
Glyma18g00656
  • PPR repeatPFAMPF01535
  • PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINPantherPTHR10483
  • Pentatricopeptide repeat (PPR) superfamily proteinATAT4G14190
Glyma18g00670
  • Gelsolin repeatPFAMPF00626
  • PROTEIN TRANSPORT PROTEIN SEC23PantherPTHR11141
  • Vesicle coat complex COPII, subunit SEC23KOGKOG1986
  • COPII vesicle coatPFAMPF04810
  • COPII vesicle coatPFAMPF04811
  • Sec23/Sec24 beta-sandwich domainPFAMPF08033
  • COPII vesicle coatPFAMPF04815
  • Gelsolin repeatPFAMPF00626
  • PROTEIN TRANSPORT PROTEIN SEC23PantherPTHR11141
  • Vesicle coat complex COPII, subunit SEC23KOGKOG1986
  • protein transport protein SEC23KOK14006
  • Sec23/Sec24 protein transport family proteinATAT1G05520
Glyma18g00680
  • Zinc finger, C2H2 typePFAMPF00096
  • Protein of unknown function DUF88PFAMPF01936
  • zinc finger (C2H2 type) family proteinATAT4G12240
Glyma18g00690
Glyma18g00700
  • Kinesin-relatedPFAMPF06548
  • KINESIN HEAVY CHAINPantherPTHR16012
  • Kinesin-like proteinKOGKOG4280
  • microtubule motor activityPFAMPF00225
  • Kinesin-relatedPFAMPF06548
  • KINESIN HEAVY CHAINPantherPTHR16012
  • Kinesin-like proteinKOGKOG4280
  • phragmoplast-associated kinesin-related protein, putativeATAT3G23670
Glyma18g00711
Glyma18g00720
  • Flavin containing amine oxidoreductasePFAMPF01593
  • AMINE OXIDASEPantherPTHR10742
  • Amine oxidaseKOGKOG0029
  • Miscellaneous (requires further characterization).EC1.14.99.-
  • CRTP; phytoene dehydrogenase, phytoene desaturase [EC:1.3.99.- ] [COG:COG3349 ] [GO:0016166 ]KOK02293
  • carotene biosynthetic processGOGO:0016120
  • phytoene dehydrogenase activityGOGO:0016166
  • chloroplastGOGO:0009507
  • carotenoid biosynthetic processGOGO:0016117
  • chloroplast envelopeGOGO:0009941
  • Activity=phytoene dehydrogenase; Pathway=divinyl ether biosynthesis II 13-LOXSoyCycPWY-5409
  • Activity=phytoene dehydrogenase; Pathway=trans-lycopene biosynthesisSoyCycPWY-5942
  • Activity=phytoene dehydrogenase; Pathway=13-LOX and 13-HPL pathwaySoyCycPWY-5410
  • Activity=phytoene dehydrogenase; Pathway=superpathway of carotenoid biosynthesisSoyCycCAROTENOID-PWY
  • Activity=phytoene dehydrogenase; Pathway=superpathway of lipoxygenaseSoyCycPWY-5433
  • Activity=phytoene dehydrogenase; Pathway=jasmonic acid biosynthesisSoyCycPWY-735
  • Flavin containing amine oxidoreductasePFAMPF01593
  • AMINE OXIDASEPantherPTHR10742
  • Amine oxidaseKOGKOG0029
  • Miscellaneous (requires further characterization).EC1.14.99.-
  • phytoene dehydrogenase, phytoene desaturase [EC:1.14.99.-]KOK02293
  • phytoene desaturase 3ATAT4G14210
  • PHYTOENE DEHYDROGENASEPantherPTHR10668
Glyma18g00730
  • Domain of unknown function (DUF1605)PFAMPF07717
  • ATP-DEPENDENT RNA HELICASEPantherPTHR18934
  • DEAH-box RNA helicaseKOGKOG0922
  • ATP-dependent helicase activityPFAMPF00270
  • helicase activityPFAMPF00271
  • helicase activityPFAMPF04408
  • Domain of unknown function (DUF1605)PFAMPF07717
  • ATP-DEPENDENT RNA HELICASEPantherPTHR18934
  • DEAH-box RNA helicaseKOGKOG0922
  • ATP-dependent RNA helicase, putativeATAT3G26560
Glyma18g00740
  • S1 RNA binding domainPFAMPF00575
  • TEX PROTEIN-RELATEDTRANSCRIPTION ACCESSORY PROTEIN (S1 RNA BINDING DOMAIN)PantherPTHR10724
  • RNA bindingPFAMPF00575
  • TEX PROTEIN-RELATEDTRANSCRIPTION ACCESSORY PROTEIN (S1 RNA BINDING DOMAIN)PantherPTHR10724
  • Nucleic acid-binding proteins superfamilyATAT3G23700
Glyma18g00750
Glyma18g00760
  • RHO protein GDP dissociation inhibitorPFAMPF02115
  • RHO GDP-DISSOCIATION INHIBITOR-RELATEDPantherPTHR10980
  • Rho GDP-dissociation inhibitorKOGKOG3205
  • Rho GDP-dissociation inhibitor activityPFAMPF02115
  • Rho GDP-dissociation inhibitor activityPantherPTHR10980
  • Rho GDP-dissociation inhibitorKOGKOG3205
  • Immunoglobulin E-set superfamily proteinATAT3G07880
Glyma18g00770
Glyma18g00780
  • Transmembrane amino acid transporter proteinPFAMPF01490
  • AMINO ACID TRANSPORTERPantherPTHR22950
  • Amino acid transportersKOGKOG1303
  • Transmembrane amino acid transporter proteinPFAMPF01490
  • AMINO ACID TRANSPORTERPantherPTHR22950
  • Amino acid transportersKOGKOG1303
  • Transmembrane amino acid transporter family proteinATAT5G16740
Glyma18g00801
  • sequence-specific DNA bindingPFAMPF00319
  • nucleusPFAMPF01486
  • MADS BOX PROTEINPantherPTHR11945
  • MADS box transcription factorKOGKOG0014
  • K-box region and MADS-box transcription factor family protein ATAT1G24260
Glyma18g00820
Glyma18g00830
Glyma18g00840
  • IQ calmodulin-binding motifPFAMPF00612
  • IQ CALMODULIN-BINDING MOTIF PROTEINSPantherPTHR23335
  • Uncharacterized conserved protein, contains IPT/TIG domainKOGKOG0520
  • calmodulin bindingPFAMPF03859
  • protein bindingPFAMPF01833
  • protein bindingPFAMPF00023
  • protein bindingPFAMPF00612
  • IQ CALMODULIN-BINDING MOTIF PROTEINSPantherPTHR23335
  • Uncharacterized conserved protein, contains IPT/TIG domainKOGKOG0520
  • Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domainsATAT1G67310
Glyma18g00850
Glyma18g00861
Glyma18g00870
Glyma18g00886
Glyma18g00903
Glyma18g00920
Glyma18g00926
  • Protease inhibitor/seed storage/LTP familyPFAMPF00234
  • glycosylphosphatidylinositol-anchored lipid protein transfer 1ATAT1G27950
Glyma18g00933
Glyma18g00940
  • Protein of unknown function (DUF579)PFAMPF04669
  • Protein of unknown function (DUF579)PFAMPF04669
  • Protein of unknown function (DUF579)ATAT1G27930
Glyma18g00950
Glyma18g00970
  • 2OG-Fe(II) oxygenase superfamilyPFAMPF03171
  • FAMILY NOT NAMEDPantherPTHR16557
  • DNA alkylation damage repair proteinKOGKOG2731
  • alkylated DNA repair protein alkB homolog 1KOK10765
  • ALKYLATED DNA REPAIR PROTEIN ALKB-RELATEDPantherPTHR16557
  • DNA alkylation damage repair proteinKOGKOG2731
  • alkylated DNA repair protein alkB homolog 1KOK10765
  • oxidoreductase, 2OG-Fe(II) oxygenase family proteinATAT1G11780
Glyma18g00980
Glyma18g00985
Glyma18g00990






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo