Genes Covered By A Chromosome Alteration FN0122914.12.M3.1

Actin PFAM PF00022
ACTIN Panther PTHR11937
Actin and related proteins KOG KOG0676
actin, other eukaryote KO K10355
actin cytoskeleton organization GO GO:0030036
response to wounding GO GO:0009611
protein binding GO GO:0005515
response to light stimulus GO GO:0009416
cell division GO GO:0051301
mitochondrion GO GO:0005739
nucleolus GO GO:0005730
root epidermal cell differentiation GO GO:0010053
seed germination GO GO:0009845
root development GO GO:0048364
response to auxin stimulus GO GO:0009733
plasma membrane GO GO:0005886
root hair elongation GO GO:0048767
cell wall GO GO:0005618
developmental growth GO GO:0048589
nucleus GO GO:0005634
cytoskeleton GO GO:0005856
cytoskeleton organization GO GO:0007010
structural constituent of cytoskeleton GO GO:0005200
Activity=ATPase; Pathway=salvage pathways of adenine, hypoxanthine, and their nucleosides SoyCyc SALVADEHYPOX-PWY
Activity=ATPase; Pathway=salvage pathways of purine nucleosides II plant SoyCyc PWY-5043
Actin PFAM PF00022
ACTIN Panther PTHR11937
Actin and related proteins KOG KOG0676
actin, other eukaryote KO K10355
actin 1 AT AT2G37620

Glyma02g29170

Protein phosphatase 2C PFAM PF00481
PROTEIN PHOSPHATASE 2C Panther PTHR13832
Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase KOG KOG0700
catalytic activity PFAM PF00481
PROTEIN PHOSPHATASE 2C Panther PTHR13832
Protein phosphatase 2C family protein AT AT5G06750

Glyma02g29190

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PFAM PF00076
POLY-A BINDING PROTEIN 2 Panther PTHR23365
Nucleolar RNA-binding protein NIFK KOG KOG4208
nucleic acid binding PFAM PF00076
POLY-A BINDING PROTEIN 2 Panther PTHR23365
Nucleolar RNA-binding protein NIFK KOG KOG4208
RNA-binding (RRM/RBD/RNP motifs) family protein AT AT5G04600

Glyma02g29206

PIF1 helicase PFAM PF05970
viral genome replication PFAM PF02689
HELICASE-RELATED Panther PTHR10492
DNA helicase PIF1/RRM3 KOG KOG0987
PIF1 helicase AT AT3G51690

Glyma02g29223

Glyma02g29240

CRS1 / YhbY (CRM) domain PFAM PF01985
RNA binding PFAM PF01985
RNA-binding CRS1 / YhbY (CRM) domain protein AT AT3G25440

Glyma02g29250

Neurochondrin PFAM PF05536
FAMILY NOT NAMED Panther PTHR13109
Neurochondrin/leucine-rich protein (Neurochondrin) KOG KOG2611
Neurochondrin PFAM PF05536
NEUROCHONDRIN Panther PTHR13109
Neurochondrin/leucine-rich protein (Neurochondrin) KOG KOG2611
neurochondrin family protein AT AT4G32050

Glyma02g29260

structural molecule activity PFAM PF04755
Plastid-lipid associated protein PAP / fibrillin family protein AT AT2G42130

Glyma02g29281

VQ motif PFAM PF05678
VQ motif-containing protein AT AT2G42140

Glyma02g29301

Glyma02g29321

catalytic activity PFAM PF01081

Glyma02g29341

Glyma02g29360

Zinc finger C-x8-C-x5-C-x3-H type (and similar) PFAM PF00642
RNA-BINDING PROTEIN RELATED Panther PTHR10288
nucleic acid binding PFAM PF00642
RNA binding PFAM PF00013
RNA-BINDING PROTEIN RELATED Panther PTHR10288
KH domain-containing protein / zinc finger (CCCH type) family protein AT AT3G12130

Glyma02g29380

Helicase conserved C-terminal domain PFAM PF00271
ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED Panther PTHR10799
Chromatin remodeling complex WSTF-ISWI, small subunit KOG KOG0385
hydrolase activity PFAM PF04851
ATP binding PFAM PF00176
ATP-dependent helicase activity PFAM PF00270
helicase activity PFAM PF00271
ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED Panther PTHR10799
Chromatin remodeling complex WSTF-ISWI, small subunit KOG KOG0385
SNF2 domain-containing protein / helicase domain-containing protein AT AT3G12810
HSA PFAM PF07529
DNA helicase EC 3.6.4.12
helicase SWR1 [EC:3.6.4.12] KO K11681

Glyma02g29395

nodulin MtN21 /EamA-like transporter family protein AT AT3G28050

Glyma02g29410

AT AT3G57990

Glyma02g29420

RIBOSOMAL PROTEIN L30 Panther PTHR11449
intracellular Panther PTHR11449
60S ribosomal protein L30 KOG KOG2988
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein AT AT3G18740

Glyma02g29430

AT AT3G57785

Glyma02g29440

Protein of unknown function (DUF620) AT AT3G19540

Glyma02g29450

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT3G13770

Glyma02g29472

UNCHARACTERIZED Panther PTHR12459
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein AT AT5G51150

Glyma02g29495

AT AT4G27510

Glyma02g29518

transcription regulator activity PFAM PF00010
BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCRIPTION FACTOR Panther PTHR10014
basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT AT3G57800

Glyma02g29541

PIF1 helicase PFAM PF05970
HELICASE-RELATED Panther PTHR10492
DNA helicase PIF1/RRM3 KOG KOG0987
PIF1 helicase AT AT3G51690

Glyma02g29564

PIF1 helicase PFAM PF05970
HELICASE-RELATED Panther PTHR10492
DNA helicase PIF1/RRM3 KOG KOG0987
PIF1 helicase AT AT5G28780

Glyma02g29587

intracellular signal transduction PFAM PF03311
CORNICHON Panther PTHR12290
ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation KOG KOG2729
Cornichon family protein AT AT3G12180

Glyma02g29610

Protein kinase domain PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Leucine rich repeat N-terminal domain PFAM PF08263
protein binding PFAM PF00560
protein phosphorylation PFAM PF07714
Protein kinase domain PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Leucine-rich repeat protein kinase family protein AT AT3G57830

Glyma02g29830

Helix-loop-helix DNA-binding domain PFAM PF00010
transcription regulator activity PFAM PF00010
basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT AT2G42280

Glyma02g29850

PLAC8 family PFAM PF04749
PLAC8 family PFAM PF04749
PLAC8 family protein AT AT5G35525

Glyma02g29900

Miro-like protein PFAM PF08477
RAS-RELATED GTPASE Panther PTHR11708
GTPase Rab11/YPT3, small G protein superfamily KOG KOG0087
Rab family, other KO K07976
pollen tube tip GO GO:0090404
regulation of pollen tube growth GO GO:0080092
pollen tube development GO GO:0048868
exocytic vesicle GO GO:0070382
pollen tube growth GO GO:0009860
apical part of cell GO GO:0045177
GTP binding GO GO:0005525
kinase binding GO GO:0019900
GTP binding PFAM PF00025
Ras family PFAM PF00071
Miro-like protein PFAM PF08477
RAS-RELATED GTPASE Panther PTHR11708
GTPase Rab11/YPT3, small G protein superfamily KOG KOG0087
Rab family, other KO K07976
RAB GTPase homolog A4D AT AT3G12160

Glyma02g29910

SUCROSE PHOSPHATE SYNTASE Panther PTHR12526:SF28
SUCROSE PHOSPHATE SYNTASE Panther PTHR12526:SF28
sucrose phosphate synthase 1F AT AT5G20280

Glyma02g29943

Glyma02g29976

Glyma02g30010

Cytochrome P450 PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP2 subfamily KOG KOG0156
Activity=monooxygenase; Pathway=echinatin biosynthesis SoyCyc PWY-6325
Activity=monooxygenase; Pathway=suberin biosynthesis SoyCyc PWY-1121
Activity=monooxygenase; Pathway=brassinosteroid biosynthesis II SoyCyc PWY-2582
Activity=monooxygenase; Pathway=phenylpropanoid biosynthesis SoyCyc PWY-361
Activity=monooxygenase; Pathway=rosmarinic acid biosynthesis I SoyCyc PWY-5048
Activity=monooxygenase; Pathway=brassinosteroid biosynthesis I SoyCyc PWY-699
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP2 subfamily KOG KOG0156
cytochrome P450, family 93, subfamily D, polypeptide 1 AT AT5G06900

Glyma02g30024

response to metal ion PFAM PF09328
phytochelatin synthase 1 (PCS1) AT AT5G44070

Glyma02g30038

Plant protein of unknown function (DUF827) AT AT1G66840

Glyma02g30052

FAMILY NOT NAMED Panther PTHR13617
AT AT3G12150

Glyma02g30066

Uncharacterized conserved protein (DUF2048) PFAM PF09752
BAAT / Acyl-CoA thioester hydrolase C terminal PFAM PF08840
FAMILY NOT NAMED Panther PTHR13617
AT AT3G12150

Glyma02g30080

Plant phosphoribosyltransferase C-terminal PFAM PF08372
SYNAPTOTAGMIN Panther PTHR10024
molecular_function GO GO:0003674
cellular_component GO GO:0005575
protein binding PFAM PF00168
Plant phosphoribosyltransferase C-terminal PFAM PF08372
SYNAPTOTAGMIN Panther PTHR10024
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein AT AT5G06850

Glyma02g30220

Basic region leucine zipper PFAM PF07716
protein dimerization activity PFAM PF00170
Basic region leucine zipper transcription factor KOG KOG3119
transcription factor TGA KO K14431
bZIP transcription factor family protein AT AT5G06839

Glyma02g30360

Protein of unknown function (DUF773) PFAM PF05600
FAMILY NOT NAMED Panther PTHR14894
CDK5 activator-binding protein KOG KOG2607
Protein of unknown function (DUF773) PFAM PF05600
CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3 Panther PTHR14894
CDK5 activator-binding protein KOG KOG2607
AT AT5G06830

Glyma02g30370

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Leucine rich repeat N-terminal domain PFAM PF08263
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
STRUBBELIG-receptor family 2 AT AT5G06820

Glyma02g30380

G-patch domain PFAM PF01585
FAMILY NOT NAMED Panther PTHR21032
Predicted RNA binding protein, contains G-patch and Zn-finger domains KOG KOG1994
nucleic acid binding PFAM PF01585
UNCHARACTERIZED Panther PTHR21032
Predicted RNA binding protein, contains G-patch and Zn-finger domains KOG KOG1994
D111/G-patch domain-containing protein AT AT3G57910

Glyma02g30452

membrane PFAM PF00892
nodulin MtN21 /EamA-like transporter family protein AT AT1G21890

Glyma02g30524

Ycf1 PFAM PF05758
Ycf1 protein AT ATCG01130

Glyma02g30597

Domain of unknown function (DUF3594) PFAM PF12165
alfin-like 3 AT AT3G42790

Glyma02g30670

SBP domain PFAM PF03110
nucleus PFAM PF03110
squamosa promoter binding protein-like 9 AT AT2G42200

Glyma02g30692

regulation of cyclin-dependent protein kinase activity PFAM PF08613
Cyclin, N-terminal domain PFAM PF00134
cyclin p4;1 AT AT2G44740

Glyma02g30714

Myb-like DNA-binding domain PFAM PF00249
myb-like HTH transcriptional regulator family protein AT AT5G06800
Homeodomain-like superfamily protein AT AT5G29000

Glyma02g30736

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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