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Integrating Genetics and Genomics to Advance Soybean Research

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Genes Covered By A Chromosome Alteration FN0112499.08.M3.1

Gene NameGene Annotation
Glyma01g09093
Glyma01g09120
  • Phosphatidylinositol 3- and 4-kinasePFAMPF00454
  • gb def: T17H3.7PantherPTHR15245:SF11
  • Phosphatidylinositol 4-kinaseKOGKOG2381
  • phosphotransferase activity, alcohol group as acceptorPFAMPF00454
  • gb def: T17H3.7PantherPTHR15245:SF11
  • Phosphatidylinositol 4-kinaseKOGKOG2381
  • phosphoinositide 4-kinase gamma 7ATAT2G03890
Glyma01g09160
  • GLUCOSYL/GLUCURONOSYL TRANSFERASESPantherPTHR11926
  • UDP-glucuronosyl and UDP-glucosyl transferaseKOGKOG1192
  • transferase activity, transferring hexosyl groupsPFAMPF00201
  • transferase activity, transferring hexosyl groupsPantherPTHR11926
  • UDP-glucuronosyl and UDP-glucosyl transferaseKOGKOG1192
  • UDP-Glycosyltransferase superfamily proteinATAT5G03490
Glyma01g09190
  • GDSL-like Lipase/AcylhydrolasePFAMPF00657
  • ZINC FINGER FYVE DOMAIN CONTAINING PROTEINPantherPTHR22835:SF27
  • lipid metabolic processPFAMPF00657
  • ZINC FINGER FYVE DOMAIN CONTAINING PROTEINPantherPTHR22835:SF27
  • GDSL-like Lipase/Acylhydrolase superfamily proteinATAT2G03980
Glyma01g09205
  • DNA-directed RNA polymerase activityPFAMPF04997
  • DNA-DIRECTED RNA POLYMERASEPantherPTHR19376
  • RNA polymerase II large subunitATAT4G35800
Glyma01g09220
  • Sugar (and other) transporterPFAMPF00083
  • SUGAR TRANSPORTERPantherPTHR11600
  • Predicted transporter (major facilitator superfamily)KOGKOG0254
  • transmembrane transporter activityPFAMPF00083
  • Major Facilitator SuperfamilyPFAMPF07690
  • SUGAR TRANSPORTERPantherPTHR11600
  • Predicted transporter (major facilitator superfamily)KOGKOG0254
  • sugar transporter 1ATAT1G11260
Glyma01g09251
Glyma01g09280
  • Myb-like DNA-binding domainPFAMPF00249
  • MYB-RELATEDPantherPTHR10641
  • Transcription factor, Myb superfamilyKOGKOG0048
  • myb proto-oncogene protein, plantKOK09422
  • Myb-like DNA-binding domainPFAMPF00249
  • MYB-RELATEDPantherPTHR10641
  • Transcription factor, Myb superfamilyKOGKOG0048
  • myb proto-oncogene protein, plantKOK09422
  • myb domain protein 92ATAT5G10280
Glyma01g09290
  • WD domain, G-beta repeatPFAMPF00400
  • MITOTIC CHECKPOINT PROTEIN AND POLY(A)+ RNA EXPORT PROTEINPantherPTHR10971
  • mRNA export protein (contains WD40 repeats)KOGKOG0647
  • nuclear envelopeGOGO:0005635
  • CUL4 RING ubiquitin ligase complexGOGO:0080008
  • protein bindingGOGO:0005515
  • nucleotide bindingGOGO:0000166
  • WD domain, G-beta repeatPFAMPF00400
  • MITOTIC CHECKPOINT PROTEIN AND POLY(A)+ RNA EXPORT PROTEINPantherPTHR10971
  • mRNA export protein (contains WD40 repeats)KOGKOG0647
  • mRNA export factorKOK14298
  • Transducin/WD40 repeat-like superfamily proteinATAT1G80670
Glyma01g09310
Glyma01g09340
Glyma01g09350
  • PectinesterasePFAMPF01095
  • Activity=pectinesterase; Pathway=homogalacturonan degradationSoyCycPWY-1081
  • Activity=pectinesterase; Pathway=homogalacturonan degradationSoyCycPWY-1081
  • cell wall modificationPFAMPF01095
  • Pectin lyase-like superfamily proteinATAT1G69940
Glyma01g09360
  • 2OG-Fe(II) oxygenase superfamilyPFAMPF03171
  • FE(II)/ ASCORBATE OXIDASE SUPERFAMILYPantherPTHR10209
  • Iron/ascorbate family oxidoreductasesKOGKOG0143
  • oxidoreductase activityPFAMPF03171
  • FE(II)/ ASCORBATE OXIDASE SUPERFAMILYPantherPTHR10209
  • Iron/ascorbate family oxidoreductasesKOGKOG0143
  • senescence-related gene 1ATAT1G17020
Glyma01g09381
  • NOL1/NOP2/sun familyPFAMPF01189
  • NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAININGPantherPTHR22807
  • S-adenosyl-L-methionine-dependent methyltransferases superfamily proteinATAT4G26600
Glyma01g09400
  • Helix-loop-helix DNA-binding domainPFAMPF00010
  • CENTROMERE-BINDING PROTEIN 1, CBP-1PantherPTHR12565:SF7
  • transcription regulator activityPFAMPF00010
  • CENTROMERE-BINDING PROTEIN 1, CBP-1PantherPTHR12565:SF7
  • basic helix-loop-helix (bHLH) DNA-binding superfamily proteinATAT1G68920
Glyma01g09410
Glyma01g09420
Glyma01g09460
Glyma01g09481
Glyma01g09500
  • 40S RIBOSOMAL PROTEIN S10PantherPTHR12146
  • Plectin/S10 domainPFAMPF03501
  • 40S RIBOSOMAL PROTEIN S10PantherPTHR12146
  • RNA binding Plectin/S10 domain-containing proteinATAT5G52650
Glyma01g09510
  • bZIP transcription factorPFAMPF00170
  • CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATEDPantherPTHR22952
  • Basic region leucine zipperPFAMPF07716
  • protein dimerization activityPFAMPF00170
  • CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATEDPantherPTHR22952
  • basic leucine-zipper 42ATAT3G30530
Glyma01g09515
Glyma01g09520
  • TCP-1/cpn60 chaperonin familyPFAMPF00118
  • CHAPERONINPantherPTHR11353
  • Mitochondrial chaperonin, Cpn60/Hsp60pKOGKOG0356
  • Activity=ATPase; Pathway=salvage pathways of adenine, hypoxanthine, and their nucleosidesSoyCycSALVADEHYPOX-PWY
  • Activity=ATPase; Pathway=salvage pathways of purine nucleosides II plantSoyCycPWY-5043
  • cellular protein metabolic processPFAMPF00118
  • cellular protein metabolic processPantherPTHR11353
  • Mitochondrial chaperonin, Cpn60/Hsp60pKOGKOG0356
  • TCP-1/cpn60 chaperonin family proteinATAT1G26230
Glyma01g09530
Glyma01g09540
  • NAD DEPENDENT EPIMERASE/DEHYDRATASEPantherPTHR10366
  • coenzyme bindingPFAMPF01370
  • NAD DEPENDENT EPIMERASE/DEHYDRATASEPantherPTHR10366
  • GDP-D-mannose 3\',5\'-epimeraseATAT5G28840
Glyma01g09581
Glyma01g09620
Glyma01g09631
  • TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNITPantherPTHR13097
  • Transcription factor TFIIE, alpha subunitATAT1G03280
Glyma01g09640
Glyma01g09650
Glyma01g09660
  • CYTH domainPFAMPF01928
  • URIDINE KINASE RELATEDPantherPTHR10285
  • Armadillo/beta-Catenin/plakoglobinKOGKOG4203
  • metabolic processPFAMPF00485
  • phosphate metabolic processPFAMPF01928
  • URIDINE KINASE RELATEDPantherPTHR10285
  • Armadillo/beta-Catenin/plakoglobinKOGKOG4203
  • Phosphoribulokinase / Uridine kinase familyATAT1G26190
Glyma01g09860
  • RNA binding (RRM/RBD/RNP motifs) family proteinATAT5G60170
Glyma01g09900
  • Formiminotransferase domain, N-terminal subdomainPFAMPF07837
  • FORMIMINOTRANSFERASE-CYCLODEAMINASEPantherPTHR12234
  • transferase activityPFAMPF07837
  • FORMIMINOTRANSFERASE-CYCLODEAMINASEPantherPTHR12234
  • transferases;folic acid bindingATAT2G20830
Glyma01g09920
  • THIAMINE PYROPHOSPHATE ENZYMESPantherPTHR18968
  • catalytic activityPFAMPF02775
  • THIAMINE PYROPHOSPHATE ENZYMESPantherPTHR18968
  • chlorsulfuron/imidazolinone resistant 1ATAT3G48560
Glyma01g09948
Glyma01g09976
  • potassium ion transmembrane transporter activityPFAMPF02705
  • potassium transporter 2ATAT2G40540
Glyma01g10004
Glyma01g10032
  • Domain of unknown function DUF223PFAMPF02721
  • Nucleic acid-binding, OB-fold-like proteinATAT2G05642
Glyma01g10060
Glyma01g10070
  • S-adenosyl-l-methionine decarboxylase leader peptidePFAMPF08132
  • S-adenosyl-l-methionine decarboxylase leader peptidePFAMPF08132
  • conserved peptide upstream open reading frame 9ATAT3G02468
Glyma01g10081
  • spermine biosynthetic processPFAMPF01536
  • spermine biosynthetic processPantherPTHR11570
  • S-adenosylmethionine decarboxylaseKOGKOG0788
  • adenosylmethionine decarboxylaseEC4.1.1.50
  • S-adenosylmethionine decarboxylase [EC:4.1.1.50]KOK01611
  • Adenosylmethionine decarboxylase family proteinATAT3G25570
Glyma01g10090
Glyma01g10100
  • Protein tyrosine kinasePFAMPF07714
  • SERINE-THREONINE PROTEIN KINASE, PLANT-TYPEPantherPTHR23258
  • Serine/threonine protein kinaseKOGKOG1187
  • Leucine rich repeat N-terminal domainPFAMPF08263
  • protein bindingPFAMPF00560
  • protein phosphorylationPFAMPF00069
  • Protein tyrosine kinasePFAMPF07714
  • SERINE-THREONINE PROTEIN KINASE, PLANT-TYPEPantherPTHR23258
  • Serine/threonine protein kinaseKOGKOG1187
  • NSP-interacting kinase 2ATAT3G25560
Glyma01g10121
Glyma01g10141
Glyma01g10160
Glyma01g10183
Glyma01g10206
Glyma01g10231
  • NB-ARC domain-containing disease resistance proteinATAT4G26090
Glyma01g10254
  • ATP bindingPFAMPF01637
  • apoptosisPFAMPF00931
  • ATP bindingPFAMPF00004
  • SERINE-THREONINE PROTEIN KINASE, PLANT-TYPEPantherPTHR23258
  • Apoptotic ATPaseKOGKOG4658
  • LRR and NB-ARC domains-containing disease resistance proteinATAT1G61180
Glyma01g10278
  • SRP-dependent cotranslational protein targeting to membranePFAMPF00448
  • GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINSPantherPTHR11564
  • signal recognition particle receptor protein, chloroplast (FTSY)ATAT2G45770
Glyma01g10302
  • regulation of signal transductionPFAMPF04177
  • regulation of signal transductionPantherPTHR10933
  • 2A phosphatase associated protein of 46 kDATAT5G53000
Glyma01g10326
  • hydrolase activityPFAMPF01975
  • Survival protein SurE-like phosphatase/nucleotidaseATAT1G72880
Glyma01g10350
Glyma01g10371
Glyma01g10390






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