Genes Covered By A Chromosome Alteration FN0110332.03.M3.6

Gene Name

Gene Annotation

Glyma12g23950

WRKY DNA -binding domain PFAM PF03106
sequence-specific DNA binding PFAM PF03106
WRKY DNA-binding protein 32 AT AT4G30935

Glyma12g24150

Domain of unknown function (DUF3598) PFAM PF12204
Domain of unknown function (DUF3598) AT AT2G44760

Glyma12g24163

dicer-like 4 AT AT5G20320

Glyma12g24176

DNA binding PFAM PF02892
Protein of unknown function (DUF 659) PFAM PF04937
protein dimerization activity PFAM PF05699
hAT transposon superfamily AT AT4G15020

Glyma12g24190

Fructose-bisphosphate aldolase class-I PFAM PF00274
FRUCTOSE-BISPHOSPHATE ALDOLASE Panther PTHR11627
Fructose-biphosphate aldolase KOG KOG1557
response to cadmium ion GO GO:0046686
plastoglobule GO GO:0010287
response to oxidative stress GO GO:0006979
mitochondrion GO GO:0005739
fructose-bisphosphate aldolase activity GO GO:0004332
chloroplast GO GO:0009507
pentose-phosphate shunt GO GO:0006098
Activity=fructose-bisphosphate aldolase; Pathway=Calvin-Benson-Bassham cycle SoyCyc CALVIN-PWY
Activity=fructose-bisphosphate aldolase; Pathway=sucrose biosynthesis SoyCyc SUCSYN-PWY
Activity=fructose-bisphosphate aldolase; Pathway=gluconeogenesis I SoyCyc GLUCONEO-PWY
Activity=fructose-bisphosphate aldolase; Pathway=sucrose degradation VI (anaerobic) SoyCyc PWY-3801
Activity=fructose-bisphosphate aldolase; Pathway=superpathway of glycolysis and Entner-Doudoroff SoyCyc GLYCOLYSIS-E-D
Activity=fructose-bisphosphate aldolase; Pathway=superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle SoyCyc PWY-5464
Activity=fructose-bisphosphate aldolase; Pathway=glycolysis I SoyCyc GLYCOLYSIS
Activity=fructose-bisphosphate aldolase; Pathway=glycolysis IV (plant cytosol) SoyCyc PWY-1042
Activity=fructose-bisphosphate aldolase; Pathway=glycolysis II (from fructose-6P) SoyCyc PWY-5484
Activity=fructose-bisphosphate aldolase; Pathway=oxygenic photosynthesis SoyCyc PHOTOALL-PWY
Activity=fructose-bisphosphate aldolase; Pathway=superpathway of cytosolic glycolysis plants, pyruvate dehydrogenase and TCA cycle SoyCyc PWY-5464
Activity=fructose-bisphosphate aldolase; Pathway=sucrose degradation to ethanol and lactate anaerobic SoyCyc PWY-3801
Activity=fructose-bisphosphate aldolase; Pathway=Glycolysis I SoyCyc GLYCOLYSIS
Activity=fructose-bisphosphate aldolase; Pathway=superpathway of glycolysis and Entner-Doudoroff SoyCyc GLYCOLYSIS-E-D
Activity=fructose-bisphosphate aldolase; Pathway=Gluconeogenesis SoyCyc GLUCONEO-PWY
Activity=fructose-bisphosphate aldolase; Pathway=Glycolysis III SoyCyc ANAGLYCOLYSIS-PWY
Activity=fructose-bisphosphate aldolase; Pathway=Glycolysis IV plant cytosol SoyCyc PWY-1042
Activity=fructose-bisphosphate aldolase; Pathway=Calvin-Benson-Bassham cycle SoyCyc CALVIN-PWY
glycolysis PFAM PF00274
glycolysis Panther PTHR11627
Fructose-biphosphate aldolase KOG KOG1557
Aldolase superfamily protein AT AT2G01140

Glyma12g24205

Domain of unknown function (DUF3594) PFAM PF12165
alfin-like 5 AT AT5G20510

Glyma12g24221

metal ion binding PFAM PF00596
PENTULOSE-5-PHOSPHATE-4-EPIMERASE-RELATED Panther PTHR10640
haloacid dehalogenase-like hydrolase family protein AT AT5G53850

Glyma12g24235

nucleic acid binding PFAM PF01107

Glyma12g24250

VQ motif PFAM PF05678
VQ motif PFAM PF05678
VQ motif-containing protein AT AT1G28280

Glyma12g24368

auxin response factor 6 AT AT1G30330

Glyma12g24486

acid-amino acid ligase activity PFAM PF00179
UBIQUITIN-CONJUGATING ENZYME E2 Panther PTHR11621
Ubiquitin-protein ligase KOG KOG0417
ubiquitin-conjugating enzyme 25 AT AT3G15355

Glyma12g24604

acid-amino acid ligase activity PFAM PF00179
UBIQUITIN-CONJUGATING ENZYME E2 Panther PTHR11621
Ubiquitin-protein ligase KOG KOG0417
ubiquitin-conjugating enzyme 25 AT AT3G15355

Glyma12g24722

CYTOCHROME P450 Panther PTHR19383:SF106
cytochrome P450, family 704, subfamily A, polypeptide 2 AT AT2G45510

Glyma12g24840

Metallothionein PFAM PF01439
metallothionein 3 AT AT3G15353

Glyma12g24860

Cytochrome C oxidase copper chaperone (COX17) PFAM PF05051
FAMILY NOT NAMED Panther PTHR16719
Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17 KOG KOG3496
COX17; cytochrome c oxidase subunit XVII assembly protein KO K02260
mitochondrial intermembrane space PFAM PF05051
mitochondrial intermembrane space Panther PTHR16719
Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17 KOG KOG3496
cytochrome c oxidase subunit XVII assembly protein KO K02260
cytochrome c oxidase 17 AT AT3G15352

Glyma12g24910

AT AT1G53035

Glyma12g24920

Glyma12g24931

DRUG-EFFLUX TRANSPORTER Panther PTHR10074:SF14
zinc induced facilitator-like 1 AT AT5G13750

Glyma12g24941

gb def: Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2 Panther PTHR23328:SF3
SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT AT2G38920

AT ATMG00660

Glyma12g24991

mitochondrial electron transport, cytochrome c to oxygen PFAM PF00510
mitochondrial electron transport, cytochrome c to oxygen Panther PTHR11403
Cytochrome oxidase subunit III and related proteins KOG KOG4664
cytochrome-c oxidase EC 1.9.3.1
cytochrome c oxidase subunit III [EC:1.9.3.1] KO K02262
Cytochrome c oxidase, subunit III AT AT2G07687

Glyma12g25000

Protein tyrosine kinase PFAM PF07714
CDC2-RELATED KINASE Panther PTHR11295
Cdc2-related protein kinase KOG KOG0600
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
CDC2-RELATED KINASE Panther PTHR11295
Cdc2-related protein kinase KOG KOG0600
Protein kinase superfamily protein AT AT1G53050

Glyma12g25080

Glyma12g25160

protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
CDPK-related kinase AT AT3G50530

Glyma12g25240

WD domain, G-beta repeat PFAM PF00400
WD40 REPEAT FAMILY Panther PTHR22850
Conserved WD40 repeat-containing protein KOG KOG0316
protein phosphorylation PFAM PF00069
WD domain, G-beta repeat PFAM PF00400
WD40 REPEAT PROTEIN Panther PTHR22847
U5 snRNP-specific protein-like factor and related proteins KOG KOG0265
SPA1-related 3 AT AT3G15354
EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE (EIF2-ALPHA KINASE)-RELATED Panther PTHR11042

Glyma12g25250

Core-2/I-Branching enzyme PFAM PF02485
GLYCOSYLTRANSFERASE 14 FAMILY MEMBER Panther PTHR19297
Branching enzyme KOG KOG0799
membrane PFAM PF02485
GLYCOSYLTRANSFERASE 14 FAMILY MEMBER Panther PTHR19297
Branching enzyme KOG KOG0799
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein AT AT4G27480

Glyma12g25460

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein binding PFAM PF00560
Di-glucose binding within endoplasmic reticulum PFAM PF11721
protein phosphorylation PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Leucine-rich repeat transmembrane protein kinase AT AT1G53430

Glyma12g25470

gb def: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5 Panther PTHR21355:SF3
gb def: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5 Panther PTHR21355:SF3
LMBR1-like membrane protein AT AT5G65290

Glyma12g25485

FTSH protease 10 AT AT1G07510

Glyma12g25500

Uncharacterised BCR, YbaB family COG0718 PFAM PF02575
chloroplast GO GO:0009507
chloroplast thylakoid membrane GO GO:0009535
chloroplast stroma GO GO:0009570
chloroplast envelope GO GO:0009941
biological_process GO GO:0008150
Uncharacterised BCR, YbaB family COG0718 PFAM PF02575
Uncharacterised BCR, YbaB family COG0718 AT AT2G24020

Glyma12g25700

Tetratricopeptide repeat PFAM PF00515
ANAPHASE PROMOTING COMPLEX SUBUNIT Panther PTHR12558
Anaphase-promoting complex (APC), Cdc16 subunit KOG KOG1173
regulation of DNA endoreduplication GO GO:0032875
phloem or xylem histogenesis GO GO:0010087
cell cycle GO GO:0007049
cellular_component GO GO:0005575
binding GO GO:0005488
protein binding PFAM PF00515
ANAPHASE PROMOTING COMPLEX SUBUNIT Panther PTHR12558
Anaphase-promoting complex (APC), Cdc16 subunit KOG KOG1173
anaphase-promoting complex subunit 6 KO K03353
anaphase promoting complex 6 AT AT1G78770

Glyma12g25713

AT AT4G15140

Glyma12g25726

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT1G63400

Glyma12g25740

Glycosyl hydrolases family 18 PFAM PF00704
hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00704
chitinase A AT AT5G24090

Glyma12g25950

Flavodoxin PFAM PF00258
1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein KOG KOG3135
negative regulation of transcription, DNA-dependent GO GO:0045892
membrane GO GO:0016020
oxidoreductase activity GO GO:0016491
vacuolar membrane GO GO:0005774
plasma membrane GO GO:0005886
vacuole GO GO:0005773
oxidation-reduction process GO GO:0055114
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor GO GO:0016655
FMN binding GO GO:0010181
response to auxin stimulus GO GO:0009733
Flavodoxin PFAM PF00258
NADPH-dependent FMN reductase PFAM PF03358
coenzyme binding PFAM PF02525
1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein KOG KOG3135
flavodoxin-like quinone reductase 1 AT AT5G54500
Quinone reductase family protein AT AT4G27270

Glyma12g26170

Aminotransferase class I and II PFAM PF00155
SUBGROUP I AMINOTRANSFERASE RELATED Panther PTHR11751
Tyrosine aminotransferase KOG KOG0259
transferase activity, transferring nitrogenous groups PFAM PF00155
SUBGROUP I AMINOTRANSFERASE RELATED Panther PTHR11751
Tyrosine aminotransferase KOG KOG0259
Tyrosine transaminase family protein AT AT5G53970

Glyma12g26181

MORN repeat PFAM PF02493
PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED Panther PTHR23084
Histone H3 K4-specific methyltransferase SET7/9 family protein AT AT1G21920

Glyma12g26190

No apical meristem (NAM) protein PFAM PF02365
regulation of transcription, DNA-dependent PFAM PF02365
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein AT AT5G53950

Glyma12g26256

Protein tyrosine kinase PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Protein kinase family protein with leucine-rich repeat domain AT AT5G25930

Glyma12g26322

nucleic acid binding PFAM PF00098

Glyma12g26388

PIF1 helicase PFAM PF05970
HELICASE-RELATED Panther PTHR10492
DNA helicase PIF1/RRM3 KOG KOG0987
PIF1 helicase AT AT3G51700

Glyma12g26454

Proteasome non-ATPase 26S subunit PFAM PF10508
26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED Panther PTHR13554
ARM repeat superfamily protein AT AT3G15180

Glyma12g26520

Ribosomal protein S20 PFAM PF01649
intracellular PFAM PF01649
chloroplast 30S ribosomal protein S20, putative AT AT3G15190

Glyma12g26550

Zinc knuckle PFAM PF00098
MULE transposase domain PFAM PF10551
FAR1-related sequence 5 AT AT4G38180

Glyma12g26693

NAD DEPENDENT EPIMERASE/DEHYDRATASE Panther PTHR10366
UDP-D-glucose/UDP-D-galactose 4-epimerase 1 AT AT1G12780

Glyma12g26836

sequence-specific DNA binding transcription factor activity PFAM PF00847
erf domain protein 9 AT AT5G44210

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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