Genes Covered By A Chromosome Alteration FN0110332.03.M3.5

Gene Name

Gene Annotation

Glyma12g17950

Plug domain of Sec61p PFAM PF10559
SECY/SEC61-ALPHA FAMILY MEMBER Panther PTHR10906
Transport protein Sec61, alpha subunit KOG KOG1373
protein transport protein SEC61 subunit alpha KO K10956
plasma membrane GO GO:0005886
protein transport GO GO:0015031
mitochondrion GO GO:0005739
membrane GO GO:0016020
P-P-bond-hydrolysis-driven protein transmembrane transporter activity GO GO:0015450
protein secretion GO GO:0009306
Plug domain of Sec61p PFAM PF10559
protein transport PFAM PF00344
protein transport Panther PTHR10906
Transport protein Sec61, alpha subunit KOG KOG1373
protein transport protein SEC61 subunit alpha KO K10956
SecY protein transport family protein AT AT2G34250

Glyma12g17960

Plant protein of unknown function (DUF641) PFAM PF04859
Plant protein of unknown function (DUF641) PFAM PF04859
Plant protein of unknown function (DUF641) AT AT3G14870

Glyma12g18027

nodulin MtN21 /EamA-like transporter family protein AT AT3G28050

Glyma12g18094

protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Protein kinase superfamily protein AT AT1G23540

Glyma12g18162

protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
MAPKK-RELATED SERINE/THREONINE PROTEIN KINASES Panther PTHR22986
Protein kinase superfamily protein AT AT1G63700

Glyma12g18230

Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A PFAM PF12222
Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein AT AT3G14920

Glyma12g18316

RAB3-GAP REGULATORY DOMAIN Panther PTHR12472
AT AT3G14910

Glyma12g18403

zinc ion binding PFAM PF00645
Polynucleotide kinase 3 phosphatase PFAM PF08645
POLYNUCLEOTIDE KINASE- 3'-PHOSPHATASE Panther PTHR12083
polynucleotide 5'-hydroxyl-kinase EC 2.7.1.78
polynucleotide 3'-phosphatase EC 3.1.3.32
bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] KO K08073
phosphoesterase AT AT3G14890

Glyma12g18490

Homeobox domain PFAM PF00046
sequence-specific DNA binding PFAM PF00046
sequence-specific DNA binding transcription factors;sequence-specific DNA binding AT AT3G18380

Glyma12g18563

Protein of unknown function (DUF3082) PFAM PF11282
AT AT3G15110

Glyma12g18636

FAR1 DNA-binding domain PFAM PF03101
FAR1-related sequence 5 AT AT4G38180

Glyma12g18710

LSM domain PFAM PF01423
SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 Panther PTHR12777
LSM domain PFAM PF01423
SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 Panther PTHR12777
Small nuclear ribonucleoprotein family protein AT AT2G47640
Small nuclear ribonucleoprotein (snRNP) Sm core protein KOG KOG3459

Glyma12g18720

Homeobox associated leucine zipper PFAM PF02183
HOMEOBOX PROTEIN Panther PTHR19418
sequence-specific DNA binding PFAM PF00046
HOMEOBOX PROTEIN Panther PTHR19418
homeobox protein 52 AT AT5G53980

Glyma12g18835

Glyma12g18950

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein kinase superfamily protein AT AT1G16670

Glyma12g18960

Cytochrome P450 PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP2 subfamily KOG KOG0156

Activity=oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen; Pathway=luteolin biosynthesis

SoyCyc

SoyCyc

SoyCyc

SoyCyc

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP2 subfamily KOG KOG0156
cytochrome P450, family 703, subfamily A, polypeptide 2 AT AT1G01280

Glyma12g18970

NUMOD3 motif PFAM PF07460
AT AT1G53250

Glyma12g18983

metabolic process PFAM PF00485
URIDINE KINASE RELATED Panther PTHR10285
uridine kinase-like 2 AT AT3G27190

Glyma12g18996

regulation of transcription, DNA-dependent PFAM PF02365
NAC domain containing protein 83 AT AT5G13180

Glyma12g19010

LIM domain PFAM PF00412
LIM DOMAIN Panther PTHR18973
zinc ion binding PFAM PF00412
Protein of unknown function (DUF3633) PFAM PF12315
LIM DOMAIN Panther PTHR18973
LIM domain-containing protein AT AT4G36860

Glyma12g19095

protein transport PFAM PF05698
trigger factor type chaperone family protein AT AT5G55220

Glyma12g19180

Glyma12g19265

nucleic acid binding PFAM PF00076
RNA-BINDING PROTEIN Panther PTHR10432
RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 KOG KOG4205
RNA-binding (RRM/RBD/RNP motifs) family protein AT AT3G15010

Glyma12g19350

Glyma12g19435

Plant protein of unknown function (DUF827) PFAM PF05701
Plant protein of unknown function (DUF827) AT AT1G66840

Glyma12g19520

lactate/malate dehydrogenase, alpha/beta C-terminal domain PFAM PF02866
MALATE AND LACTATE DEHYDROGENASE Panther PTHR11540
NAD-dependent malate dehydrogenase KOG KOG1494
apoplast GO GO:0048046
membrane GO GO:0016020
copper ion binding GO GO:0005507
malate dehydrogenase activity GO GO:0016615
chloroplast GO GO:0009507
response to salt stress GO GO:0009651
response to cadmium ion GO GO:0046686
defense response to bacterium GO GO:0042742
cell wall GO GO:0005618
mitochondrion GO GO:0005739
response to cold GO GO:0009409
Activity=malate dehydrogenase; Pathway=gluconeogenesis I SoyCyc GLUCONEO-PWY
Activity=malate dehydrogenase; Pathway=aspartate degradation II SoyCyc MALATE-ASPARTATE-SHUTTLE-PWY
Activity=malate dehydrogenase; Pathway=superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle SoyCyc PWY-5464
Activity=malate dehydrogenase; Pathway=superpathway of glyoxylate cycle and fatty acid degradation SoyCyc PWY-561
Activity=malate dehydrogenase; Pathway=glyoxylate cycle SoyCyc GLYOXYLATE-BYPASS
Activity=malate dehydrogenase; Pathway=TCA cycle II (eukaryotic) SoyCyc PWY-5690
Activity=malate dehydrogenase; Pathway=TCA cycle variation III eukaryotic SoyCyc PWY-5690
Activity=malate dehydrogenase; Pathway=Gluconeogenesis SoyCyc GLUCONEO-PWY
Activity=malate dehydrogenase; Pathway=aspartate degradation II SoyCyc MALATE-ASPARTATE-SHUTTLE-PWY
oxidoreductase activity PFAM PF00056
lactate/malate dehydrogenase, alpha/beta C-terminal domain PFAM PF02866
MALATE AND LACTATE DEHYDROGENASE Panther PTHR11540
NAD-dependent malate dehydrogenase KOG KOG1494
Lactate/malate dehydrogenase family protein AT AT1G53240

Glyma12g19660

glycine hydroxymethyltransferase activity PFAM PF00464
glycine hydroxymethyltransferase activity Panther PTHR11680
serine hydroxymethyltransferase 3 AT AT4G32520

Glyma12g19800

NAD DEPENDENT EPIMERASE/DEHYDRATASE Panther PTHR10366
3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 AT AT2G26260

Glyma12g19940

Glyma12g19950

Glyma12g19960

UNCHARACTERIZED Panther PTHR12570
potassium ion binding PFAM PF00224
Protein of unknown function (DUF803) PFAM PF05653
GDP-fucose protein O-fucosyltransferase PFAM PF10250
UNCHARACTERIZED Panther PTHR12570
O-fucosyltransferase family protein AT AT3G02250

Glyma12g20160

TCP family transcription factor PFAM PF03634
TCP family transcription factor PFAM PF03634
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 AT AT1G53230

Glyma12g20180

PHD-finger PFAM PF00628
PHD FINGER TRANSCRIPTION FACTOR Panther PTHR12505
positive regulation of flower development GO GO:0009911
zinc ion binding GO GO:0008270
seed germination GO GO:0009845
regulation of transcription, DNA-dependent GO GO:0006355
DNA binding GO GO:0003677
cellular_component GO GO:0005575
DNA binding PFAM PF01426
protein binding PFAM PF00628
PHD FINGER TRANSCRIPTION FACTOR Panther PTHR12505
PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein AT AT4G22140

Glyma12g20201

nucleic acid binding PFAM PF01107

Glyma12g20220

homogentisate 1,2-dioxygenase PFAM PF04209
HOMOGENTISATE 1,2-DIOXYGENASE Panther PTHR11056
Homogentisate 1,2-dioxygenase KOG KOG1417
tyrosine metabolic process PFAM PF04209
tyrosine metabolic process Panther PTHR11056
Homogentisate 1,2-dioxygenase KOG KOG1417
homogentisate 1,2-dioxygenase AT AT5G54080

Glyma12g20230

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
RING/U-box superfamily protein AT AT3G15070

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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